| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0077 |
|---|
| Symbol | |
|---|
| ID | 4020532 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 92115 |
|---|
| End bp | 93281 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637960254 |
|---|
| Product | succinyl-diaminopimelate desuccinylase |
|---|
| Protein accession | YP_567218 |
|---|
| Protein GI | 91974559 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0144823 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATCAT CGCGTGACGC CCTCTCCATC GCTCAAGCCC TGCTGCGCTG TCCGTCTGTC
ACGCCGGCCG ACGCCGGCGC GCTCGGTGTG CTGGAGACGC TGCTGAAGGA CGCCGGCTTC
ACCGCGCATC GCGTGACCTT CAGCGAGCCC GGCGCCGCCG ACATCGACAA TCTCTACGCA
CGGATCGGCG ATGGCGCGCC GCATCTGTGC TTTGCCGGCC ATACCGACGT GGTGCCGCCG
GGCGACGCAG ACGCGTGGAG CCACGGCGCG TTTTCCGGCG ATGTCGAAGG CGGCCTGCTG
TACGGCCGCG GCGCGGTCGA CATGAAAGGC GGCATCGCCT GCGCGGTCGC CGCCGTGCTC
GATCATCTCG CCGCCCATGG CGGCCGGCCA AAGGGATCGA TCTCGTTCCT GATCACCGGC
GACGAGGAAG ACGTCGCCGT CAACGGCACC GTCAAGCTGC TGCAATGGGC GGCGGATCGC
GGCGAGACAT TCGATCATTG CATCGTCGGC GAGCCGAGCA ATGTCGAGGC GATCGGCGAC
ACCATCAAGA TAGGCCGGCG CGGCTCGCAG TCCGGCATGC TGATCGTCGA CGGACTGCAG
GGCCACGTCG CCTATCCGCA TCGGGCCTCG AACCCGATCC CGGATATCGC GGCGCTGATC
ACCGCGCTGA ACGACGAGCC GCTGGATCAG GGCTCGGCGC AGTTTCAGCC GTCCAATCTC
GAATTCACCT CGGTCGATGT CGGAAATCCG GCGACTAATG TGATCCCGGC GCAGGCGCGG
GCCAAATTCA ACATCCGCTT CAACGATCAC CACACCCAGG ATTCGTTGAA GGCGCTGATC
GAGCAGCGGC TGGCGGCGGC GTGCGGCAAC CGCATCCGCG CGCGGATCGA GTGGTTGCCG
TCGAACGCCG ACGTGTTCGT CACCAAGCCC GGCAATTTCA CCGATCTGGT CACCGCATCG
ATCGCCGACG TGACCGGCCG CACGCCCGAT CTCAACACCG GCGGCGGCAC CTCGGACGCG
CGGTTCATCG CCAAATACTG CCCGGTGGTG GAGTTCGGCC TGGTCGGCCA GACCATGCAC
CAGATCGACG AGCGCACGCC GGTCGCGGAT CTCGACCAGC TCACCGCGAT CTATCGCGGC
GTGCTGGAGC GATATTTCAA GTCATAA
|
|---|
| Protein sequence | MTSSRDALSI AQALLRCPSV TPADAGALGV LETLLKDAGF TAHRVTFSEP GAADIDNLYA
RIGDGAPHLC FAGHTDVVPP GDADAWSHGA FSGDVEGGLL YGRGAVDMKG GIACAVAAVL
DHLAAHGGRP KGSISFLITG DEEDVAVNGT VKLLQWAADR GETFDHCIVG EPSNVEAIGD
TIKIGRRGSQ SGMLIVDGLQ GHVAYPHRAS NPIPDIAALI TALNDEPLDQ GSAQFQPSNL
EFTSVDVGNP ATNVIPAQAR AKFNIRFNDH HTQDSLKALI EQRLAAACGN RIRARIEWLP
SNADVFVTKP GNFTDLVTAS IADVTGRTPD LNTGGGTSDA RFIAKYCPVV EFGLVGQTMH
QIDERTPVAD LDQLTAIYRG VLERYFKS
|
|---|
| |