| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0066 |
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| Symbol | |
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| ID | 4020520 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 79164 |
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| End bp | 81395 |
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| Gene Length | 2232 bp |
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| Protein Length | 743 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637960242 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_567207 |
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| Protein GI | 91974548 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.928161 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0154172 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTCAG CCCCGCTTCC GGACAACGAG CAGGCGCGGC TCGCCGCGCT GCGCCGATAT
GATATTCTCG ATACCCCGCC GGAGGATTGT TTCGACATAT TCCCTCGGCT GGTCGTCCGG
GCCATCGGCG TCCCCTCGGC CGTGATCAGC TTTGTCGACA GAGAGCGTCA ATGGTTCAAG
GCCCGGATCA ATGTCGGCGA TCAACAGACA CCGCGCGATA TAGCGTTCTG CGCGCATGCG
ATCCTTCTTG AGCGCCCGCT CGTCGTTGCG GATGCGACGA TCGATCCGCG GTTCCACGAC
AACCCGCTGG TGACCGCACC GGGCGGCATG CGGTTCTACG CAGGTGCCCC GATACGAACC
GCGGATGGCT TCCCTATCGG CGTGCTCTGC GCGATCGACA AGGTCCCGCG CCTCCTCGGA
AAAGCGCAGC TGGAGACGCT CAGAGAGCTG GCGTCGCTGG TCGCCGACCA GCTCGAACTG
CGACTGGCGA ATCGGCGTCT CGCTCGCGAA CTCGCGGAAC GCGAACGCAC CGAGAACCAT
CTGCTGTCGA TGAGCCGAAC GCTAGAACTG TCGAACCTGC GCCTGGATGC GGCACTCAAC
AACTTTCTCC ATGGGCTGTG CATGTTCGAT GGCGACCGCA AGGTGGTGGT GTCGAATGCA
CGCTTCTCCG AAATCTACTC TCTGGAACCC GACGAAATCG AGTGCGGTGT TCCTTTGAGC
GCGATCCAGT CGGTGTGCCG GGAACGCGGG ACGTTCGTGG AAACCTGGTC GGAACGTCGG
CTTGGTCGAT CTTCGCACGA GATCTCCGAA GTGAGTTCGC TTCTAGACGG GCGGGCGATC
CTGGTGCGCT GTCAACCAGT CGCAGGTGGT GGCTGGATGA CGGTGCACGA GGACATCACC
GAACGCTATC GCAGCGAACA GCAAATCGCC CATATGGCCC GCCACGATCT GTTGACCGGC
CTGCTCAACC GCGGAGCCTT CCACGAAAGG ATGGATGAGG CTTGTGCACG CCTGCGCCGC
TGGGGTGAGA CCTTCTCGGT CATCATGCTG GACCTCGACC GCTTCAAGCT GGTCAACGAT
TCGCTCGGAC ATCCGGCGGG GGATGCCTTG CTGCGCGCGG TCGTCTCGCG ACTCAAGGCG
TGCATCCGCG AAACGGATGT CCTGGCGCGA CTCGGCGGTG ACGAGTTCGC CGTGCTGCAG
ACGAGGACGA AGGACTCCTA CGAAGAGGCG GTGGCATTCG CGGACCGTAT CGTCAATTGT
CTGATCGATC CGATCGAAAT CGAAGGACAT CAGCTCGTCA TCAGCACCAG CGCGGGGATC
GCGCTGGCCC CCCAGCACGG CACGGATTCC GACGAACTGA TCAAAAACGC CGACCTCGCG
CTCTATCAAG CCAAGGCGGC CGGCCGAAAC GGATACGTCA CCTTCGAAAC GGCGATGAAG
GATCGTGCCA ATGCGCGCCA ACAACTCGAA GGAGAGCTGC GACAAGCCAT TCTGCACCGA
GAATTCGATC TGTACTATCA GCCTCAAGTG GACGCCAGGT CTGGACGAGT GATCGGCGCG
GAGGCGCTGC TCCGCTGGCG CCACCCAAGG CGAGGCTTCG TGCCGCCGTC CGAATTCATT
CCGATCGCGG AGGAAACCGG CCTGATCGAG AAACTCGGCG AATGGGTTCT GACGGAGGCT
ACCACCGAAG CCATTCGCTG GCCGGCCCCC ATCAAACTCG CGATCAATCT CTCTCCGATC
CAGCTGACTC GCGGCAAGTT GGTCGACACT GTGACGCAAG CTCTGCGATT CTCTGGGCTG
CCTCCCGGAC GCTTGGAGGT GGAGATCACG GAAACCGTGT TTCTGGAGGA CGAAGTCAAC
AACCTCGCCG TCATTAGGCA GCTACGGGCG CTCGGGGTAT CGGTCGCCCT AGACGATTTC
GGGACAGGAT ACTCGTCGCT CAGCTATCTG ACGAGGTTTC CGTTCGATCA AATCAAAATC
GACAAGTTCT TCAGCATGAA CCTGATCGAC CGACGCGACT GCGCCGCAAT CGTCTCCTCG
GTAATAACCC TAGCGCGAGG ATTGGGTATC TCGACTGTCG CCGAAGGCGT TGAGACTGTG
CGTCAGTTCG AGCTGCTGCG GGAGGCGGGC GTCGACTACT TCCAGGGATA TCTGTTCGGT
CACCCAGTGC CGGCTTCGGC GCTCGATTTC GGTACTGCTC AAGCCGTCGC GCGCATCACG
GAGGTTGCCT AA
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| Protein sequence | MISAPLPDNE QARLAALRRY DILDTPPEDC FDIFPRLVVR AIGVPSAVIS FVDRERQWFK
ARINVGDQQT PRDIAFCAHA ILLERPLVVA DATIDPRFHD NPLVTAPGGM RFYAGAPIRT
ADGFPIGVLC AIDKVPRLLG KAQLETLREL ASLVADQLEL RLANRRLARE LAERERTENH
LLSMSRTLEL SNLRLDAALN NFLHGLCMFD GDRKVVVSNA RFSEIYSLEP DEIECGVPLS
AIQSVCRERG TFVETWSERR LGRSSHEISE VSSLLDGRAI LVRCQPVAGG GWMTVHEDIT
ERYRSEQQIA HMARHDLLTG LLNRGAFHER MDEACARLRR WGETFSVIML DLDRFKLVND
SLGHPAGDAL LRAVVSRLKA CIRETDVLAR LGGDEFAVLQ TRTKDSYEEA VAFADRIVNC
LIDPIEIEGH QLVISTSAGI ALAPQHGTDS DELIKNADLA LYQAKAAGRN GYVTFETAMK
DRANARQQLE GELRQAILHR EFDLYYQPQV DARSGRVIGA EALLRWRHPR RGFVPPSEFI
PIAEETGLIE KLGEWVLTEA TTEAIRWPAP IKLAINLSPI QLTRGKLVDT VTQALRFSGL
PPGRLEVEIT ETVFLEDEVN NLAVIRQLRA LGVSVALDDF GTGYSSLSYL TRFPFDQIKI
DKFFSMNLID RRDCAAIVSS VITLARGLGI STVAEGVETV RQFELLREAG VDYFQGYLFG
HPVPASALDF GTAQAVARIT EVA
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