| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0064 |
|---|
| Symbol | |
|---|
| ID | 4020518 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 75240 |
|---|
| End bp | 76196 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637960240 |
|---|
| Product | helix-turn-helix, AraC type |
|---|
| Protein accession | YP_567205 |
|---|
| Protein GI | 91974546 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.585972 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.173321 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCGTCGCC GATTCGACTC GAACTGGAGA ACTGCATTGG CCGAACCGAA GAGGGTGTCT
GCGGTGGACC GTGCAAGCGA ACAGGTCGGG AGGCCCCCCC GATCCGCGAT CAGGTCATGG
TCTCAAAGAA AGATCGAGGT GGGATACTGG TCTATCGACT GGCCGGGCGT TGTTCAAAGA
GAGATGTCTC TCTCCACCAA AGCCTTCTGC GAACTATCGA TGGTGTTGAC GCCTGTGGAC
GACATGACTT TGCTCTGCGG TGAAACCACC ATAAGAACCG GCCCGCTTCA GAGCGGGCGA
TTTCGCGTCG CGCCAGCCAA CACCACCCTA TCGGCGAGCG TTTCGGCGAG TAGCACCGTC
AAATTCCTGA AAGTATTCTT CGCGGAGGAG ACGGCGCGCG CGATCGGCTC GGCGATCCAT
TCTCATTCGA TCGATATCGA AATGGAAGAT CCAATGCTGG GCACGGACGA CCCGTTCCTG
GTCTCCCTCG GCAGAGAAGT AGTCGAAAAC ATCAATGATC CCCGGCCCAC GAGCCGTGCC
TTCGCCGAAG AAGCAGCGAT CTTGATGGCC GGGAGGGTCG TTTCCCACTA TTCGACAGCG
CGCTACTGCA CCAGCATGGC GGTTCGATCT CGCGGTCTGG ATCCTGACCT CGACCGAGCA
CTGCAACTGA TGCGGGATCA CATCTGTGGC ACCATCGATC TCGGAATGCT TGCGACGTCC
GTCGACATGC CGGCATTCTC GTTTGTCCGC GCCTTCCAGA AGAAGTACGG CTTGTCTCCA
ATCCGATATC ATCGCCATAT GAGGATGGAA CAGGCCAAGA CGCTGCTATC AACGACAGCG
TTCCCGATTG GCAAGATATC GAACATGCTG GGTTTCAGTG AATCGAGCCA TTTCGTGTCA
GCGTTTCGGA AGGCGACGGG TCGCACGCCA CTGGCATATC GCCGCACTCG AAGTTGA
|
|---|
| Protein sequence | MRRRFDSNWR TALAEPKRVS AVDRASEQVG RPPRSAIRSW SQRKIEVGYW SIDWPGVVQR
EMSLSTKAFC ELSMVLTPVD DMTLLCGETT IRTGPLQSGR FRVAPANTTL SASVSASSTV
KFLKVFFAEE TARAIGSAIH SHSIDIEMED PMLGTDDPFL VSLGREVVEN INDPRPTSRA
FAEEAAILMA GRVVSHYSTA RYCTSMAVRS RGLDPDLDRA LQLMRDHICG TIDLGMLATS
VDMPAFSFVR AFQKKYGLSP IRYHRHMRME QAKTLLSTTA FPIGKISNML GFSESSHFVS
AFRKATGRTP LAYRRTRS
|
|---|
| |