| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0042 |
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| Symbol | |
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| ID | 4020496 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 53163 |
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| End bp | 55085 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637960218 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_567183 |
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| Protein GI | 91974524 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAGCCT GGGAGGTCAA AGGTCCTGCG AAGGGAACTT GCAGGTCGTG GCGCGACGCT
TATCCGGAAC TTGCCGGAAT GGTCGCTCGA ATCACTGCTC CGCGCGGGCG CGGGATTGCG
TGGGAAGGCA CCGAGATCTG GGCCTATCGC GACCGGCCGA GCAGCATATC GGAGTGCCTT
GCCGCAAATG TCGCGCGCTG GCCCGATCGC GAGGCTTATG TATTCCATCC CGGCGGCGAG
AGGCTGACAT GGGGCGAAGT CGGCGCCCAA GTCGATCGCG TCGCTGCGGC GCTTCGACAG
GAATTCGGTT TCAGGAAGCG CGACCGGCTA TGTCTGCTGA CGGCGGGCTG CCCGGAATAC
GTCATCGCCT ATCTCGCCAT TGTGCAGCTC GGCGGCGTCG CCGTGCCGGT CAATCTCGGG
CTGACCGATG AAGGACTGGC GGCGCAGATC AACAAGGTTG GCGCCAAGGG GCTGGTGGTC
TCTTCCGAGG TCTGGAGCGG CAAGCTCGAT GCGGTGCGCG GCGGCCTCGA CAGCGTCGAG
GCGGTGTTCG TCATCGGCGG CGCGGCGCCG CAAGGGACGC TGGCTTTCTC CGAACTAAGC
TCCCTGAGAA CGACGCCGGT CGATCACGAG GCGGTCGATG AATGGGATCT GTGTGCGATC
TCCTTCACGT CGGGCACGAC CGGCGTGCCG AAGGGGACGA TGGCGATGCA CATCAATGCG
CTCGGCTGCG CGCAGAACGT GGTGATCGCA GCCAAGGGGC TGGGCCCCGA CGACGTCAAC
CTGTGTATGC CGCCTTTGTA TCACAACACG GCGGTCTATG CGGATTTCCT GCCTGCGCTG
CTGAGTGGCG GAAAATGCGT GATCATGTCG GCGTTCACGC CGCTGGAGGC CATCAAGCTG
ATCGAGGCCG AGCGGGCAAC GTGGGCCGTC GCGGCCCCGA TCATGCTCTG GATGATGATG
AACCATCCGG AATTCAGGAA CCACGACTGC TCGACGCTCA AGAAGATCCT CTTCGGCGGC
CATGCGTCAT CCGAAACCTT CATCAACCAG CTCAATCGCG AATTCGCGCC GATCGCGATG
GTGAACGCCG GCTCGGTGTC GGAGAGCACG GCGGTCGGTT TCGCGCTGCC CACCGAAGAC
GCGATCCGCA AGATCACCAG TTGCGGCCTC GCGACTCCGA ATACCGACAT CGCCATCTTC
GACGATGCCG GCAACGAAGT TCTCGAGCCC AACGTGATCG GTGAAGTTGC CTATCGTGGC
CAGCAGACCA ATGCGGGTTA CTGGGAAGAA CCAGGCAAGA CCGCCGAAGT CTTTCGCCGC
GACGGCTTTG TGCTGTCCGG CGACTGGGCC AAGATCGACG AAGACGGCTA TCTCTGGCTG
CTGGACCGCA AGAAAGACAT GGTCGTGCGG GGCGGCCAGA ACGTCTACTG CATCGAGGTC
GAGAACAAGT TGTACCTGCA CCCCAAGGTC CTGCGGGCAG CGGTGGTCGG CGTGCCGGAC
CACGTGTTCT CGGAGCGATT GAAGGCGATC GTGGTGCTCA AGCCCGGTGA GAGTGCAACA
GCCGACGAGA TCCGCGAGCA TTGCGCCAAG CATCTCGCCA AATACGAGAC GCCGGAATAC
GTGGTGTTCG GAGCCAGTCT GCCAGCCAAT GCCGCAGGAA AGACCCTGAA GCGGCCGCTG
GTGGACTTCT GGGGCGACTC GCCGGGCACA CCGCTTGCGC GATTCTCCGC ATTCTGCGCC
AGCCTGCCGC CGGCGTTGTT CGATACGCCG CATCTCAAGC TTGATGGACG GCCGATGACG
CCCCGCGAGG CACTGGGCGA ACTCCAACAA GGCTCGGAGC GCGGGCAACA TCTTGCGCGA
ATGATCGAAC AGCAGGGCGT CTGTGGGCTG ACGACGCCCG ACGAAGCCAG ATTTCGCAAA
TGA
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| Protein sequence | MGAWEVKGPA KGTCRSWRDA YPELAGMVAR ITAPRGRGIA WEGTEIWAYR DRPSSISECL
AANVARWPDR EAYVFHPGGE RLTWGEVGAQ VDRVAAALRQ EFGFRKRDRL CLLTAGCPEY
VIAYLAIVQL GGVAVPVNLG LTDEGLAAQI NKVGAKGLVV SSEVWSGKLD AVRGGLDSVE
AVFVIGGAAP QGTLAFSELS SLRTTPVDHE AVDEWDLCAI SFTSGTTGVP KGTMAMHINA
LGCAQNVVIA AKGLGPDDVN LCMPPLYHNT AVYADFLPAL LSGGKCVIMS AFTPLEAIKL
IEAERATWAV AAPIMLWMMM NHPEFRNHDC STLKKILFGG HASSETFINQ LNREFAPIAM
VNAGSVSEST AVGFALPTED AIRKITSCGL ATPNTDIAIF DDAGNEVLEP NVIGEVAYRG
QQTNAGYWEE PGKTAEVFRR DGFVLSGDWA KIDEDGYLWL LDRKKDMVVR GGQNVYCIEV
ENKLYLHPKV LRAAVVGVPD HVFSERLKAI VVLKPGESAT ADEIREHCAK HLAKYETPEY
VVFGASLPAN AAGKTLKRPL VDFWGDSPGT PLARFSAFCA SLPPALFDTP HLKLDGRPMT
PREALGELQQ GSERGQHLAR MIEQQGVCGL TTPDEARFRK
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