Gene RPD_0038 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0038 
Symbol 
ID4020492 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp48319 
End bp49446 
Gene Length1128 bp 
Protein Length375 aa 
Translation table11 
GC content48% 
IMG OID637960214 
Producthypothetical protein 
Protein accessionYP_567179 
Protein GI91974520 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCTAATAT ATCGATTCTG TTTTTCAGCA GGTGGGGAGC AGATCGCCAT GGCAAGAACA 
AAGACGCTGA ACTCAAACGG CAAAAAGATC TCGAAGAAGA ACGGACCTCG TTATCCAACG
CAAGTAATAG ACATCGGATT CAATTTCGCA GGTTATCCAA TTTTCAGCGC AACAGCGGCT
GCTCTGCTGC GAAAAATGCA TACTCAAAAA GTACGGCCCC CGCAGCCAGA TCATATATCT
GGCATGGCGC CTTACAGTCG CATCCCTTTC GCTGAAACTT CTTTCATTAT TGGCCATTGG
TTTTTAGAGA CGGCCCTCAA CGAAACCGCC ATGTTCTTCG TGAGACGAGC ATACCAACAG
ACAAAACAAT TTGCCTCAGA AACGGAGGCA GTGAAGCAGA TTGACGACTT CTTTTCGCTA
TCTGTTTCAT CGCCAGTGAA GAAAGTCGAA GCATACGACA AGATTTGCGG AACGCAGATC
GCAGGCAAGG CCGATCTGAT GGAAAAGATT TGGACGATCT GCGCGATCCG AGATTTGCTG
TACCACCATG AAGCGAACCG ATATCGCGGA GGCAAGGCAC CAGCCTGTGT TGCAAAACTT
TTCGGCTACA TCTCCGATAC TCCGGACCAA AGATCATGGA TCAAAGCTGG CTGGAGCCCT
GTGCTAGGTT CAAAATCGGC GTTCGATTTT GTCGTGCAGA CTGTAATCGA TTTTACCGAC
ACGATGTCTG CCGAACTTGG CCACAAACAT CGCTTCCAGA CCGTCGACCA CTTAGCCAAA
AAGCCGGGGA TAGTCTCCCT ATGCGCCGAA CCTGGCCTCG TTCCACCGAA AGAGACCATT
AAGAGCATTC AGGAAAAATA TACGGACCCT AAGACGAAGG CAAAAGTCAT AGCATTCGAC
GGAACTAGAC GTGGGACGTA CTACCTATTC TCAAAGAACA AAAAGTATTA TGTCGTTCAT
GTCACCAATA GAGGACGCGA ACGCACGGTC CCTGCTTGGG AAATTCTGAA AATAAAAAAC
GCTGATCGGA TTGGATGGAT CCCAATTCCC TGGAAAGGGA TGGATTCGGA GCTCAAAAGA
AGCGTAAGAG AAAGGGTGTC TGATATCGAA ATTTATCGTT CAGCATAA
 
Protein sequence
MLIYRFCFSA GGEQIAMART KTLNSNGKKI SKKNGPRYPT QVIDIGFNFA GYPIFSATAA 
ALLRKMHTQK VRPPQPDHIS GMAPYSRIPF AETSFIIGHW FLETALNETA MFFVRRAYQQ
TKQFASETEA VKQIDDFFSL SVSSPVKKVE AYDKICGTQI AGKADLMEKI WTICAIRDLL
YHHEANRYRG GKAPACVAKL FGYISDTPDQ RSWIKAGWSP VLGSKSAFDF VVQTVIDFTD
TMSAELGHKH RFQTVDHLAK KPGIVSLCAE PGLVPPKETI KSIQEKYTDP KTKAKVIAFD
GTRRGTYYLF SKNKKYYVVH VTNRGRERTV PAWEILKIKN ADRIGWIPIP WKGMDSELKR
SVRERVSDIE IYRSA