Gene Mbur_1178 details

Gene Information

• Locus tag: Mbur_1178
• ID: 3998333
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanococcoides burtonii DSM 6242
• Kingdom: Archaea
• Replicon accession: NC_007955
• Strand: -
• Start bp: 1267426
• End bp: 1269240
• Gene Length: 1815 bp
• Protein Length: 604 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637958944
• Product: DNA-directed RNA polymerase subunit B'
• Protein accession: YP_565851
• Protein GI: 91773159
• COG category: [K] Transcription
• COG ID: [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit
• TIGRFAM ID: [TIGR03670] DNA-directed RNA polymerase subunit B

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.00000000367699
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTTGAAG CAAAAGTCTT CCTCGATGGG GAACTTATCG GAACTCACAA TGATCCGGTA 
GAGCTTGTCG AGAGTATTAG GGGGCAGCGC CGTAGTGGCA TGTTGCCTCA CCAGTTGAAT 
GTAACGCTTT ATGAGGATAT TCATGAAGTG ATCCTCAGTT CTGATATAGG TCGTGCAAGA 
AGGCCTGCAA TAGTTGTTGA AAATGGTGTC CCGTCGATCA CGGCAGAGTA TGTCGAGAAA 
GTCCGGGATG GTGAGATCTC GTTCCGCGAT CTTCTGGACA TGGGATATGT TGAATATCTG 
GATGCTGAGG AGGAAGAGAA TGCATTCATT GGTCTTTATG AAGAAGACCT TACTCCTAAC 
CACACTCATC TAGAGATCGA TCCTTCCTTG ATGCTTGGTA TCTGTACCGG TATGGTTCCA 
TATCCTGAGC ACAATGCTTC TCCGAGGAAC ACGATGGGTG CAGCTATGAT CAAGCAGTGT 
ATAGGAGTTT CTTCATCCAA CCTGAAACTT AGGCCTGATA CACGTGCGCA TGTGCTTCAC 
TATCCGCAGA AGGCAATGAC ACGCACTCAG ACCTGTGATG CTATCCATTT CGATGAGCGT 
CCTGCTGGGC AGAACTTCGT TGTCGCTGTC ATGTCCTACG AAGGGCATAA CATTGAGGAT 
GCACTGGTTT TCAATAAAGG TTCCATTCAG AGAGGACTTG GAAGAAGCCA CTTCCTGAGG 
ACCTTCGAAG GTGAAGAACG CCGTTATCCT GGTGGACAGG AAGACAAGTT CGAGATCCCT 
GATTCTGAGT TCAGAGGTGC CCGTAGTGCA GATGCATATG CAAACCTCGA CATTGACGGT 
CTTGTAAATC CTGAGACTGT TGTAGGTCCA AATGATGTGC TTATTGGTAA GACAAGTCCT 
CCAAGGTTCC TTGAAGAACA GTCTGACTTT GGTATAACCA TTGAACAGCG CAGAGAAAGT 
GCAATTACGA TGCGCTCGAA CGAGAAAGGT ATTGTTGATA CTGTTATTCT TACTGAATCT 
ATCAATGGTA CAAGGCTCGC AAAGGTGAAA ATCAGGGATG AAAGGATCCC TGAGATCGGT 
GACAAGTTCG CATCAAGACA CGGTCAGAAG GGTGTTATCG GATTGATAGT TCCGTATCAT 
GATATGCCAT TTACGGAACT GGGTATGGTT CCTGATCTTG TTATTAATCC TCATGCTATC 
CCTTCACGTA TGACCGTTGC TCACGTTCTG GAAATGATCG GTGGGAAACT CGGTTCTCTT 
GAAGGTCAGC GTAAGTGGGG CACTGCATTC TCCGGTGATA TGGAGGATGG TATTCGCGAT 
GGGCTTAAGA ATCGTGGTTT CTCACATACA GGGAAAGAGG TGTTCTGTGA TGGTGTTACT 
GGTAAGAAGA TCCAGGCGGA TGTTTTTGTT GGTGTTATCC TTTACCAGAA ACTCCACCAC 
ATGGTCGCAT CAAAGATCCA TGCAAGGTCC AGAGGCCCTG TGCAGGTATT GACCCGTCAG 
CCAACCGAGG GTCGTGCTCG CGAAGGTGGT CTTAGGTTTG GTGAGATGGA AAGGGATGTA 
CTGATCGGGC ACGGTGCTGC GATGACCTTG AAGGAAAGGC TTCTCGATGA GTCTGACAAG 
GTCGTAGAAC TTGTATGCGC TCAATGTGGT ATGGTGGCAA CTTTTGACAG GACTCGTAAT 
ATCAGATACT GTTCGAACTG TGGTGCTGAA ACGGATATTC ACCCGGTGGA AATGAGTTAT 
GCTTTCAAGT TGCTTCTTGA TGAGATCAAA TCCCTTGGGG TTGCTCCAAG ACTTAGACTT 
GATGATGCGG TGTGA 

 

Protein sequence

MVEAKVFLDG ELIGTHNDPV ELVESIRGQR RSGMLPHQLN VTLYEDIHEV ILSSDIGRAR 
RPAIVVENGV PSITAEYVEK VRDGEISFRD LLDMGYVEYL DAEEEENAFI GLYEEDLTPN 
HTHLEIDPSL MLGICTGMVP YPEHNASPRN TMGAAMIKQC IGVSSSNLKL RPDTRAHVLH 
YPQKAMTRTQ TCDAIHFDER PAGQNFVVAV MSYEGHNIED ALVFNKGSIQ RGLGRSHFLR 
TFEGEERRYP GGQEDKFEIP DSEFRGARSA DAYANLDIDG LVNPETVVGP NDVLIGKTSP 
PRFLEEQSDF GITIEQRRES AITMRSNEKG IVDTVILTES INGTRLAKVK IRDERIPEIG 
DKFASRHGQK GVIGLIVPYH DMPFTELGMV PDLVINPHAI PSRMTVAHVL EMIGGKLGSL 
EGQRKWGTAF SGDMEDGIRD GLKNRGFSHT GKEVFCDGVT GKKIQADVFV GVILYQKLHH 
MVASKIHARS RGPVQVLTRQ PTEGRAREGG LRFGEMERDV LIGHGAAMTL KERLLDESDK 
VVELVCAQCG MVATFDRTRN IRYCSNCGAE TDIHPVEMSY AFKLLLDEIK SLGVAPRLRL 
DDAV