Gene Mbur_1176 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMbur_1176 
Symbol 
ID3998331 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanococcoides burtonii DSM 6242 
KingdomArchaea 
Replicon accessionNC_007955 
Strand- 
Start bp1263609 
End bp1264769 
Gene Length1161 bp 
Protein Length386 aa 
Translation table11 
GC content47% 
IMG OID637958942 
ProductDNA-directed RNA polymerase subunit A'' 
Protein accessionYP_565849 
Protein GI91773157 
COG category[K] Transcription 
COG ID[COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit 
TIGRFAM ID[TIGR02389] DNA-directed RNA polymerase, subunit A'' 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.00000620668 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCATCA GTGAAGCTAC TATCGATTCT ATGATAAGCG GTCTTCCGCT TCCAATGACG 
ACACTTGCTA CGTTAAGAAA GGATGTAGTT GGTGTCGGTG TCACGAAAAA AGAAATGGAA 
GAGATCATCG AACGTGTCAT GGCAGACTAC AATTATGCAT GCGTTGAGCC ATGTGAAGCG 
GTTGGTGTGG TCTCTGCACA GTCCATTGGT GAACCTGGCA CTCAGATGAC CATGCGTACT 
TTCCACTACG CTGGTGTGGC TGAGATCAAC GTTACGTTGG GTTTGCCACG TCTTATCGAG 
ATCGTGGATG CAAGGAAGAC TCCAAGTACT CCGATGATGA CCGTCGCTCT TGCTAAAGAG 
CACGCTGCAG ACAGGGACTT CGCAAGGAAG GTTGCATGGG AGATCGAAGC TACTCATATC 
GAGCATCTGG CGGACGTTAC GACCGATCTT GCTAACATGA ACCTTATCCT CGATCTTAAC 
GAGAAGATGC TCTTGCAGAG GGACATTGAT GTTGATGCCA TTGCTGAGAA ACTCGCAGAG 
GGTCTTAAAG TAAATGTAAA GATCCCCAGT GAGGTTGCAA ATCAGATCAT TGTGATCCCG 
AAGGAACCTC TATACAGGGA TCTGCTCCAG CTTGCCAAGA ACATTCATGG TATCACTTTG 
AAAGGTATTG AGGGTATCAA GAGGGTAGTT ATCAGAAAGG ATGGTGATGA ATACACTCTT 
TACACTGAAG GCTCCATGCT TAAGGAGATT CTCGAAGTCG AAGGTATAGA CCTTTCAAGG 
ACCTCTACTA ACAATATTGG TGAGATCTAT GAAGTGTTCG GCATTGAAGC TGCTCGTTTT 
GCCATCATTA AGGAAGCCAG TGACACTCTG CGTGAGCAGG GTCTTACTGT GGATATCCGC 
CACCTCATGC TTGTGTCGGA CATCATGACT TGTGATGGAG AGGTAAAGCA GATCGGTCGT 
CACGGTATTT CCGGTGAGAA GGCCAGTGTG TTTGCCCGTG CAGCGTTCGA GGTTACTGTT 
AATCACTTGC TTGATGCCGG TATGCGCGGT GATATCGATG AACTTAATGG TGTTACTGAG 
AACATTATTG TCGGTCAGCC GATCAAGCTC GGTACTGGTG ATGTTCACCT GGTTGCAAGA 
AATCCTCTCA AAAATCTTTA A
 
Protein sequence
MSISEATIDS MISGLPLPMT TLATLRKDVV GVGVTKKEME EIIERVMADY NYACVEPCEA 
VGVVSAQSIG EPGTQMTMRT FHYAGVAEIN VTLGLPRLIE IVDARKTPST PMMTVALAKE 
HAADRDFARK VAWEIEATHI EHLADVTTDL ANMNLILDLN EKMLLQRDID VDAIAEKLAE 
GLKVNVKIPS EVANQIIVIP KEPLYRDLLQ LAKNIHGITL KGIEGIKRVV IRKDGDEYTL 
YTEGSMLKEI LEVEGIDLSR TSTNNIGEIY EVFGIEAARF AIIKEASDTL REQGLTVDIR 
HLMLVSDIMT CDGEVKQIGR HGISGEKASV FARAAFEVTV NHLLDAGMRG DIDELNGVTE 
NIIVGQPIKL GTGDVHLVAR NPLKNL