| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbur_0857 |
|---|
| Symbol | |
|---|
| ID | 3996855 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcoides burtonii DSM 6242 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007955 |
|---|
| Strand | - |
|---|
| Start bp | 900669 |
|---|
| End bp | 901508 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637958642 |
|---|
| Product | rhomboid-like protein |
|---|
| Protein accession | YP_565558 |
|---|
| Protein GI | 91772866 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.00124204 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGTTCA CCTGTCGCTT TTGTGGAAAA TCGTATTGTT CAGATCACCG ACTTCCTGAA
AGACATGCAT GCACAGGACT TGACAGGGAT ACCGGACAAT ACAATGATCA TTCTGATAAT
AATTACCGCA GTGATCATAA CAGTTCGGGA CAAGTGCCCG GTACCAACAT GGATGAACTC
GTGAAGAACA TGATGAAAGA AGCGGCAAAG ACCGCAGCAA AAGGGGCCGC ATCCCAAGCT
GCCCGCAGGA CACGTTCATC AATAAAGACA AGCCCCTCGA TGGCGATCAT ATTCATTTGC
ATCGTTTCGT TCTTCCTGAA AATTATTCCG GGCTATGTAG CATCATTCCA GCTACTGCCA
AGCCTGATGT TCTTAAAACC ATGGACGCTT ATCACACACA TGTTCCTTCA TGCCAGTTTC
GGACACCTGT TCTTTAATAT GCTGGTTTTG TTCTTCTTTG GCAGAGAACT TGAAAAACGT
ATAGGAAAAG ACCTTTTCCT TTATGTATAT TTCATATCAG GAATAATTGC AGCACTCGGA
TATTCAATAA CCAGTGCAAA CAATGTCCCG ATCATAGGGG CTAGCGGTGC GATCATGGGA
GTATTTGCAG CACTTACAAT ACTTGCACCA AACATGGAAG TATATGTGTA TTTCATCCCG
ATGAAAATAA AATACGCACT CTTATTGTTC GTACTTCTTG ACTTTATGCT ATTGAATGCA
AATGATATGG TAGCCCACAC TGCCCACCTT AGTGGTGTCC TGGTAGGAGT AATCATGGGA
TACAAGATCA AAAAGACAAT TGTACCGCGC AGTCAGAATT CCTACGGTTT TCGAAGGTGA
|
|---|
| Protein sequence | MMFTCRFCGK SYCSDHRLPE RHACTGLDRD TGQYNDHSDN NYRSDHNSSG QVPGTNMDEL
VKNMMKEAAK TAAKGAASQA ARRTRSSIKT SPSMAIIFIC IVSFFLKIIP GYVASFQLLP
SLMFLKPWTL ITHMFLHASF GHLFFNMLVL FFFGRELEKR IGKDLFLYVY FISGIIAALG
YSITSANNVP IIGASGAIMG VFAALTILAP NMEVYVYFIP MKIKYALLLF VLLDFMLLNA
NDMVAHTAHL SGVLVGVIMG YKIKKTIVPR SQNSYGFRR
|
|---|
| |