| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbur_0582 |
|---|
| Symbol | |
|---|
| ID | 3996794 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcoides burtonii DSM 6242 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007955 |
|---|
| Strand | + |
|---|
| Start bp | 591703 |
|---|
| End bp | 592908 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 637958387 |
|---|
| Product | CRISPR-associated Cas1 family protein |
|---|
| Protein accession | YP_565305 |
|---|
| Protein GI | 91772613 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1518] Uncharacterized protein predicted to be involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00287] CRISPR-associated endonuclease Cas1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.0780613 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGT TACTTCTAAA CGGTCATGGA ATTAACATGC ATGTTGATGG TGCTAAACTC
CATATCAAAG ATGGAAGATT CTCAACAACT GAAGATCCTC AGGAGTACGT ATTCTCTCCA
AAGAGGATGG ATATTGATAG TATTGTTGTA TATGGAAGAA GTGGATCTCT AAGCCTTGAA
GCTATTAGAT GGTTGATTAA ACACAATGTA CAGATTACTA TGTTAGATTG GAATGGAAAG
CTTCTAACTA CAATGCTTCC TTCTGAAAGT ACCAATGTAA AAACCAAGTT TGCTCAATAC
CATGCTTATG AAGATTCAGA TGTAAGACTG AAGCTTGCAA AGAAATTCAT TGAGGCTAAG
TTCTCTAAAT CTGAAGCTGT TCTTGATTAT TTGAAACAAA GAGATCCTGA AATTGAGTAT
GATTTCTCTG ATGATAAGGC TAAACTTGAG AAAGCTAATT CTATTCGTGA TATCTTGGGT
GTTGAAGGTG GAGTTGCTTG GAAGTATTGG AATGAGTATG CTAAAGCCAT TCCTGAAGAA
TATGATTTCA GAGCAAGAAC TGATAATAAT GCCAGAGCTT CTAACTCAGG AGATAAAATC
AATGTAATGT TCAATTATGG TTATGCATTA CTTGAATCTG AATGTATGAG AGCTATAAAT
TCAGTTGGTC TTGATGCTCA TGTTGGGTTT TTGCATGAGA TGAATCCAAG TAAAAATAGT
TTAGCCTACG ATCTCCAAGA ACCGTTCAGG TTTATTGTTG ATCTTGCTGT AATGAACTTG
ATTGAAAAGG GAGTTATGAA TAATAAGGAC TTTATTAGGA CTGAGAGCTT TTCACTTAGG
CTTAGACCAA CTGGAGCAAG GAAGGTTACT GAAGAGTTTA ATGCTATGAT GAATGGAAAG
GTTGAGTACA GGAAGAAGAA CAGTTCTTGG AGTTCTGTCT TATTAGTTAA AGCAAGGGAG
TTAAGCCATC AGCTTGTTGG GAAGAGAAAA ATAGTTGAGT TTAGCAAACC CGTTTATGTT
GACAAGAGAG TTGATACTGA TTCTTTAAGG CAGAAGATAA TTGATATGTC TTATACTGAC
TGGAAGAAGA TGGGATTCTC AAAGGGTACT TTACATTATA TGAAGCAGAA TGCCAAGAGT
GATAAACCGT TTACTCTCAA TGCTCATGTA AGGGAAAGGT TGGAGAACTG GACGAGATGT
TATTGA
|
|---|
| Protein sequence | MKLLLLNGHG INMHVDGAKL HIKDGRFSTT EDPQEYVFSP KRMDIDSIVV YGRSGSLSLE
AIRWLIKHNV QITMLDWNGK LLTTMLPSES TNVKTKFAQY HAYEDSDVRL KLAKKFIEAK
FSKSEAVLDY LKQRDPEIEY DFSDDKAKLE KANSIRDILG VEGGVAWKYW NEYAKAIPEE
YDFRARTDNN ARASNSGDKI NVMFNYGYAL LESECMRAIN SVGLDAHVGF LHEMNPSKNS
LAYDLQEPFR FIVDLAVMNL IEKGVMNNKD FIRTESFSLR LRPTGARKVT EEFNAMMNGK
VEYRKKNSSW SSVLLVKARE LSHQLVGKRK IVEFSKPVYV DKRVDTDSLR QKIIDMSYTD
WKKMGFSKGT LHYMKQNAKS DKPFTLNAHV RERLENWTRC Y
|
|---|
| |