| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3745 |
|---|
| Symbol | |
|---|
| ID | 4020307 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 4511528 |
|---|
| End bp | 4512154 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637957809 |
|---|
| Product | isochorismatase hydrolase |
|---|
| Protein accession | YP_564741 |
|---|
| Protein GI | 91795090 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1335] Amidases related to nicotinamidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAAC CTTATGTACG CTTAGATAAA GATGATGCGG TAGTGCTATT GGTGGATCAT
CAGACGGGTT TGCTGTCACT GGTTCGCGAC ATAGACCCTG ATAAATTTAA AAACAACGTA
CTCGCCTTGG CTAATTTGGC TAAATATTTC GAGTTACCGA CTATCTTGAC CACCAGTTTT
GAAGATGGCC CTAACGGCCC CTTAGTGCCA GAGTTAAAAA ATATGTTCCC CGATGCGCCG
TTTATTGCTC GTCCTGGACA AATTAATGCT TGGGATAATG AAGACTTCGT TGCGGCAGTC
AAAGCGACAG GTAAAAAGCA AATTATTATC GCGGGTGTGG TTACCGAAGT TTGTGTTGCA
TTTCCAACAT TATCGGCACT TGCAGCCGGT TTTGATGTGT TTGTGATTAC CGATGCATCG
GGCACCTTTA ACGATATCAC CCGTAATGCA GCCCATAACC GCATGTCGGC GGCAGGTGCA
CAGCTTATGT CTTGGTTTGG TGCCGCAGGC GAATTACACC GAGATTGGCG TAACGATGTG
GAAGGTTTAG GCAGCCTATT CTCTCAACAT ATTCCAGACT ATCGAAATCT GATGAATAGT
TATCTGACAG TTAATGCTAA AAAGTAA
|
|---|
| Protein sequence | MTKPYVRLDK DDAVVLLVDH QTGLLSLVRD IDPDKFKNNV LALANLAKYF ELPTILTTSF
EDGPNGPLVP ELKNMFPDAP FIARPGQINA WDNEDFVAAV KATGKKQIII AGVVTEVCVA
FPTLSALAAG FDVFVITDAS GTFNDITRNA AHNRMSAAGA QLMSWFGAAG ELHRDWRNDV
EGLGSLFSQH IPDYRNLMNS YLTVNAKK
|
|---|
| |