| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3744 |
|---|
| Symbol | |
|---|
| ID | 4020306 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 4510540 |
|---|
| End bp | 4511310 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637957808 |
|---|
| Product | regulatory protein, DeoR |
|---|
| Protein accession | YP_564740 |
|---|
| Protein GI | 91795089 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAAC GTAACACTCA GCAACGTAGA CATTCGATCA TAAAGCTTGT TAATGACCAA
GGCGAAGTCA GCGTTGATGA GCTAGCCAGC TTGTTTTCAA CTTCAGAAGT GACCATACGT
AAAGATTTGG CCAGCTTGGA AACCCATGGG CTGCTGTTGC GTCGTTATGG CGGCGCCGTG
CCTGTGCCAC AAGAAATGAC TCAAATAGCC AGTGAAAAAT TGTCATCGAA TAAGCAGGCT
ATCGCCACTG AGGCTGCCAA GCTAATACGG GATCATAACC GTATTATTAT CGACAGCGGC
AGCACCACTT CCGGCATAGT GCAGCAATTA AACGGCAAGC GCGGCTTAGT GGTGATGACA
AATTCCTTGC AGTTAGCTAA TGCGATTCAT GAACTCGAAC ATGAGCCCAC CTTATTGATG
ACCGGTGGCA CTTGGGATCC TCATTCTGAA TCTTTCCAAG GCCAAGTGGC CGAGCAAGTA
TTACGCTCAT ACAATTTTGA CCAGCTTTTT ATCGGCGCGG ACGGCATCGA TCTCGCCCGG
GGCACGACCA CCTTTAATGA ACTCACTGGC CTTAGCAAGG TGATGGCAGA AATGTCCCGT
GAAGTGGTGG TGTTACTGGA GTCGACCAAG ATAGGTCGTA AAATTCCCAA TTTGGAACTG
CCTTGGGGGG TTGTCGATGT ACTGGTTACC GACGACAGGA TCGCTATTGA TGCCATTAAT
ACTATTACAG ACCAAGGCGT GAAAGTGATC CTTTCTGCCT ACGTTAGCTA A
|
|---|
| Protein sequence | MTKRNTQQRR HSIIKLVNDQ GEVSVDELAS LFSTSEVTIR KDLASLETHG LLLRRYGGAV
PVPQEMTQIA SEKLSSNKQA IATEAAKLIR DHNRIIIDSG STTSGIVQQL NGKRGLVVMT
NSLQLANAIH ELEHEPTLLM TGGTWDPHSE SFQGQVAEQV LRSYNFDQLF IGADGIDLAR
GTTTFNELTG LSKVMAEMSR EVVVLLESTK IGRKIPNLEL PWGVVDVLVT DDRIAIDAIN
TITDQGVKVI LSAYVS
|
|---|
| |