| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3716 |
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| Symbol | |
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| ID | 4020278 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 4456943 |
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| End bp | 4459528 |
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| Gene Length | 2586 bp |
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| Protein Length | 861 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637957780 |
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| Product | nitrite reductase (NAD(P)H) large subunit, NirB |
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| Protein accession | YP_564712 |
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| Protein GI | 91795061 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1251] NAD(P)H-nitrite reductase |
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| TIGRFAM ID | [TIGR02374] nitrite reductase [NAD(P)H], large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGAAAC AAATGCAAAA AACAGCAATT TTAGTCGTGG GTAACGGTAT GGTAGGCCAC
AAATTTATCG ACAACTTAGT GAGCCAGCCT GAGGCGATGG ACAAACTTGC CATCACCACC
TTCAGTGAAG AAGCTCAGCT CGCCTACGAC AGGGTGCAAC TTAGCGGCTA TTTTAGTGGC
AAAACGGCCC AAGACTTAGC CCTGACTGAT GAAGCTTATT ATCAGCAGCA TGGAGTTAAG
TATCTGCTGA ACACCAAAAT TAGCGCTATA TCGCCCAAAA CCCGCACTGT GACGGATGCT
CATGGCGGGC AAATTCATTA TGACAAGCTC ATTCTTGCCA CTGGCTCTTA TCCTTTTGTG
CCGCCCATTC CCGGTAACCA GCAGCCCCAT TGTTTGGTAT ATCGCACCAT CGGCGATTTA
GAAGCCATTA AAGCGTCCAG TAAGCTCAGT AAAAAAGGCG TGGTCATAGG CGGTGGATTA
TTAGGTTTAG AGGCGGCTAA CGCCCTTAAA AACTTAGGCT TAGAAACCCA TGTGGTGGAG
TTCGCACCGC GCTTAATGGC GATGCAGCTT GATGATGGCG GCGCGAATTT ATTAAGGCAT
CAAATTGAAG CATTAGGGGT TTATGTCCAC ACCGAAAAAG CGACCAAAGA AATAGTGGCT
GGGCAGAATA GCCGTTATCG ACTCAACTTT GGTGATGGTG ATTACCTAGA AACCGACATG
ATAGTGTTTT CGGCTGGTAT TCGGCCACAG GATGAGTTGG CCCGAGCGGC AGGACTTGAG
CTCGGTGAGC GCGGTGGCAT AGTGATTAAT GACTATTGCC AAACCAGTGA TCAAGACATT
TATGCCGTGG GGGAATGCGC CTTGTGGCAT GGCAAAATTT TCGGTTTAGT AGCGCCGGGT
TATGCCATGG CCTCAGTGGC GGCATCGCAC ATTCTAGGTG GTGAGGCGCG CTTTACTGGC
GCGGACATGA GCACGAAATT GAAACTGCTC GGCCTAGATG TTGCCAGTAT CGGCGATGCG
CACGGGCAAA CCCCAGGGGC GCAGTCTTAT ACCTTCCGTG ATGAAGTCGC TCAGGTATAT
AAGCGTTTAG TAGTGTCGGC AAGCGGGGAT AAAGTCTTAG GCGCCGTGCT GGTGGGGGAC
GTTGAAGCCT ATGGTCAGCT ATTGCAGATG ATGCTTAACG ATATTCCTTT GCCCGCCCAT
CCTTCCACGC TTATTTTACC GAGTATTGCA GGGGACAAAC CCAAGGGCTT AGGTGTTGAT
GCCTTGCCAG CGGCGGCGCA GTTGTGTTCC TGCTTTGATG TGACTAAGGG CGATATAGTC
CAAGCGGTTG CCGCTGGCGC GACCGACATG GGCGCTATCA AGTCTTGCAC TAAGGCCTCC
ACGGGTTGCG GCGGTTGCAG CGCGTTAGTC AAACAAGTAT TGGACTGCGA ACTGGCAGCC
CTTGGCCATG AAGTCGACAA GAGCCTGTGC GAACACTTTA GTTATACCCG CCCAGAGCTT
GCAGACATAG TGCGTATCAA GCAAATCAAA AGCTTCGATG AGTTGCTTTT AAGCCACGGC
AAAGGCCTAG GTTGTGAAGT CTGCAAACCG ACTATTGGCT CGATCCTCGC CTCATTCTGG
AATGAATACG TACTTGAAGA TCAACATATT GGCCTGCAAG ACACTAACGA TGTGTACCTT
GGCAATATGC AAAAAGATGG CAGCTATTCT GTGGTGCCGC GCATCGCAGG TGGGGAGATC
ACCCCAGATA AACTCATCGT CCTAGGTGAA GTCGCCAAGG AGTTTGACCT CTATACCAAG
ATCACCGGTG GACAACGCAT CGATTTATTC GGCGCCCAGC TCCATGAGTT ACCGCTTATT
TGGCGCAAGC TGGTGGACGC AGGCTTTGAG ACGGGTCATG CCTATGGCAA GTCGGTGCGC
ACGGTTAAAT CCTGCGTTGG TGATAGTTGG TGCCGTTATG GTTTAAAAGA CAGCCTAGGT
TTTGCCATCG ACATAGAGAA CCGCTACAAG GGATTGCGCT CACCCCACAA GCTTAAATTT
GCCGTCTCTG GCTGCACCCG AGAATGCGCC GAAGCCCAGT CAAAGGATGT GGGCATTATC
GCCACTGAAT CAGGTTGGAA CCTGTTTGTG GGCGGAAATG GCGGCATGCG GCCTCGCCAT
GCTGAGCTTT TAGCTGTCGA TCTCGATGAC AAAACCCTGA TTCAATACAT AGACAGATTC
TTGATGTTCT ATATCCGCAG CGCTGAGCGT TTGCAACGTA CTTCTGTGTG GATAGAAAGC
CTAGAGGGCG GTTTAGATTA CCTAAAATCT GTGATCATAG ATGACAAGTT AGGTCTAGCG
GCAGGGCTTG AAGCTGAGAT GGCAAACGCC ATTAATCAGT ATCAGTGTGA GTGGAAAACC
ACCCTAGAAA GCCCAGATAA ACTCAAACGC TTCCAACACT TTATTAATAG TGATCTGAGT
GATGCAGGCC AAGTATATCA AAGGAAGCGC CAGCAACGTC ATCCCGCTGA ACAGGATATT
CAAACATCAG GCCGCACATT AGACGGCCAA ACATTAGCCA TCAAAATATT AGAAATCGTC
GACTAG
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| Protein sequence | MEKQMQKTAI LVVGNGMVGH KFIDNLVSQP EAMDKLAITT FSEEAQLAYD RVQLSGYFSG
KTAQDLALTD EAYYQQHGVK YLLNTKISAI SPKTRTVTDA HGGQIHYDKL ILATGSYPFV
PPIPGNQQPH CLVYRTIGDL EAIKASSKLS KKGVVIGGGL LGLEAANALK NLGLETHVVE
FAPRLMAMQL DDGGANLLRH QIEALGVYVH TEKATKEIVA GQNSRYRLNF GDGDYLETDM
IVFSAGIRPQ DELARAAGLE LGERGGIVIN DYCQTSDQDI YAVGECALWH GKIFGLVAPG
YAMASVAASH ILGGEARFTG ADMSTKLKLL GLDVASIGDA HGQTPGAQSY TFRDEVAQVY
KRLVVSASGD KVLGAVLVGD VEAYGQLLQM MLNDIPLPAH PSTLILPSIA GDKPKGLGVD
ALPAAAQLCS CFDVTKGDIV QAVAAGATDM GAIKSCTKAS TGCGGCSALV KQVLDCELAA
LGHEVDKSLC EHFSYTRPEL ADIVRIKQIK SFDELLLSHG KGLGCEVCKP TIGSILASFW
NEYVLEDQHI GLQDTNDVYL GNMQKDGSYS VVPRIAGGEI TPDKLIVLGE VAKEFDLYTK
ITGGQRIDLF GAQLHELPLI WRKLVDAGFE TGHAYGKSVR TVKSCVGDSW CRYGLKDSLG
FAIDIENRYK GLRSPHKLKF AVSGCTRECA EAQSKDVGII ATESGWNLFV GGNGGMRPRH
AELLAVDLDD KTLIQYIDRF LMFYIRSAER LQRTSVWIES LEGGLDYLKS VIIDDKLGLA
AGLEAEMANA INQYQCEWKT TLESPDKLKR FQHFINSDLS DAGQVYQRKR QQRHPAEQDI
QTSGRTLDGQ TLAIKILEIV D
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