Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_3685 |
Symbol | |
ID | 4020242 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 4417856 |
End bp | 4419337 |
Gene Length | 1482 bp |
Protein Length | 493 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 637957744 |
Product | triple helix repeat-containing collagen |
Protein accession | YP_564681 |
Protein GI | 91795030 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAGGA TTTTTCACTC GTTAACCACA GTCGCCCTCT TGGGCTTAAG TTCAGCATCG GCCGTGGCAT CAAACTGGGA TGCCCATTGG TCCTTTGCCG GCCATGGTAA TGACAACTTT AATGGTGCCC ATCATGGTGC CTTCCCGTTA AGCGGCACTG GCAGTTTCGA ATTCGGCAAG CTTAATCAGG CCCTTTATTA TGACATTCTT AAAGTGGACT CCTTGAGCAT TCAAAAAGCG GCTGAGCCTT TCTCTTTGTC CTTCTGGGCC TTGAGAGAAA CCCGTGATTA TGCCGAGACC TTATTCTCTA AACAGCAGTC GCCATTCAGC GCCGGTATGT CGGTCAGCCT CGATGGTGCC AATGCCATAG TGGTGGATAT TCGTAATGGT CAAGGCGGCA GTATCAAGAT AAAGAGTCAG CAAGTCTGGA CCGATATGAA TGATTGGCAT CATTTAGTCG TGACCTACAA TGGCTCAATT CAGGCAGGTG GCATTAGTTT GTACCTTGAT AATCAACGGC TCGATGTCGA TGTTATCAGT GACAACTTAA CCGGAGACAT AGGGGCAAGT GACCCTGTCG TTATCGGTGC TGACAGCGAA ACTAGCTACG CCACCTTCAA CGGTGCCATC GATGAAGTCT ATTTAGGCAG CCGCGCCTTT AATAGCAGTG ATATCGAGTG TCTGTATGCA CTGAGAGACA ACTGTGTCGA TCCCATTAGT GACGAGCCTC CAGTGATTGC CCCTCAAGGG CCACGGGGCT TTGAAGGCCC CGCTGGGCCA CAGGGTCTAC GGGGGGCAAC AGGCTCGCAA GGTGTTAAGG GAGCGAAAGG CCCAATTGGC GACCCAGGCG TCAAAGGCCC GCAAGGCTCG CAAGGCAGCA AAGGCGATCT GGGCTTGAAG GGCCTAACAG GCATCGCGGG TAATCCAGGT GTTGATGGCC GTAATGGCCG TGATGGTAAA GATGGCAACG CGGGCTTAAT GGGCTTACAA GGCCCAGATG GCCTGCAAGG CCCTAAAGGA GTCCGGGGGG ATACTGGCCC GATGGGACCA CAGGGCGATC CTGGACCTCA AGGCTTAAAA GGGGCGACTG GCGCCAAGGG CGTCACTGGA GCGACTGGCG ATGCTGGCCC ACAGGGCTAT GCCGGTGCAC CTGGCATTCC TGGTGCTGAT GGTGTTCAAG GTAACCCAGG TTTACCAGGT TTGAAAGGGA ACACTGGATC TTCTGGGCCC TCAGGCGCTC CTGGCGGCAA AGGCCCCAAA GGGCTAAAAG GCCCTCATGG GGATGTTATT CCTGGTGATA ATGCCCCTGC ATTTGGTCCA CAGGGGCCAA GAGGCCCAGA TGGCTACAAT ACTTATTACA GCACTGGTGG ACGTAATTTT AGCATGGGAA CAGTACTCTC TACGGAAAAA GCCCTGAGTC CGGTTGAACG ATATAAGGCG ATACAGGCAA GTAAAGCTAT CCAGGATGGA GACATAAAAT GA
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Protein sequence | MKRIFHSLTT VALLGLSSAS AVASNWDAHW SFAGHGNDNF NGAHHGAFPL SGTGSFEFGK LNQALYYDIL KVDSLSIQKA AEPFSLSFWA LRETRDYAET LFSKQQSPFS AGMSVSLDGA NAIVVDIRNG QGGSIKIKSQ QVWTDMNDWH HLVVTYNGSI QAGGISLYLD NQRLDVDVIS DNLTGDIGAS DPVVIGADSE TSYATFNGAI DEVYLGSRAF NSSDIECLYA LRDNCVDPIS DEPPVIAPQG PRGFEGPAGP QGLRGATGSQ GVKGAKGPIG DPGVKGPQGS QGSKGDLGLK GLTGIAGNPG VDGRNGRDGK DGNAGLMGLQ GPDGLQGPKG VRGDTGPMGP QGDPGPQGLK GATGAKGVTG ATGDAGPQGY AGAPGIPGAD GVQGNPGLPG LKGNTGSSGP SGAPGGKGPK GLKGPHGDVI PGDNAPAFGP QGPRGPDGYN TYYSTGGRNF SMGTVLSTEK ALSPVERYKA IQASKAIQDG DIK
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