| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3659 |
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| Symbol | fliF |
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| ID | 4020216 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 4375051 |
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| End bp | 4376748 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637957720 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_564657 |
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| Protein GI | 91795006 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGACTA ATGTGATCCA GTCTGAGCAA GAAATTCAAG GTGAAATACA GTCACCGAGC
CTGTTTTCCA GTGCCGCTCA AGGTTGGCGT AGGTTTACCC AAGGCGACAA GCAGGTCATG
GTGTTGGCGC TGTTGGCAAC CGTCGTCGCC AGTGTGATAG TGATCATGCT GTGGACGGCA
AGCCAAGGAT ATCGCCCCCT CTATGGCAGC CAAGAAAACG TCGAAACATC TCAAGTTATT
GAGGTGCTGG AAGCCGAAGG TATTTATTAT CGAATTGAGT CGCATACTGG CCTAGTTTTA
GTGGCTGACG ATCAGTTGGG TAAGGCGCGT ATGTTGCTCG CTGCTCGCGG CGTTAAGGCG
AAAGTGCCAT CAGGGATGGA CGAACTCGAC AGCTCAAGTT TAGGTACTAG CCAGTTTATG
GAGCAGGCTA AATATCGCCA CGGGTTAGAA GGTGAGCTTG CCAGAAGCAT AATGTCACTT
AAAAATGTGC GTTCAGCTCG GGTGCACTTG GCTATTCCTA AGCGCAGTTT GTTTATTCGT
CAAACTCCTG AGTTACCTAC CGCTTCTGTG ATGTTGCAGC TAAGCCCTGG GGCAGAGTTA
AGCCAATCTC AAGTGGAAGC AGTGGTCAAT TTGGTCGCCG GTAGCGTCAC TGGTATGGAG
ACGTCTGGGG TTAAGATTGT CGATCAAGAG GGGCGTTTTC TTAGCGCCAA TATTAATGAA
GATCAGGACA TGACCCAGGC TAGGGATAGG CAAATAACCT ATACCCGAGA GCTTGAGCAA
AACCTGATGC ATAACGCCAG TTCTATGTTA GAGGCTATTT TAGGGCCGAA TAACTTTCAA
GTGAAAATTG CCGCTAAGGT TAACTTTAAT CAAATAGAAG AAACCAAGGA AGCCTTAGAT
CCTCAGTCTG TACTGGTACA AGAGCGTACC AGCTCAGATG ATAAAAATGC CGCCTTAGCC
CAAGGGATCC CCGGGGCTTT GAGTAACCAG CCTCCACAAG CGGCAGAAGG TGATAAAAAA
GACAACACTC GCAATCTGCG TCAGGAAGCC AATCGCCAAT TCGATGTCGG CCGTAGCGTG
CGTCATATTC GCTATCAGCA GATGCAGCTA GAGAATATAT CTGTATCGGT ATTGGTCAAT
AATACCGTCG CGACTGGGTT AACAACCGAT GATGCCGAGC TTACCAAGTT AGGCTCCATG
GTGAAGGACG CCATAGGTTT TTCCAGCGAA CGTGGTGACA GCTTCAGCAT TAATGCTTTT
GCCTTTAGCG TGCCAACGGT AGCGGAGTTT GAGCCGCTAC CTTGGTGGCA AGTCGAAGAT
TATCAGGCGT ATTTACGTTA TCTCATCGGT GGCCTGCTGG GGCTTGGATT GATTCTGTTT
GTGCTGCGTC CTTTAGTGTC ACACCTTACC TTCACCGCTA AACATGTCGA CAATGAAACC
CGTGAGCCTG AAACCATTAA CTTAGCCAAA AGTGCAGAGT CCACCACGGC AGAAAGTAAT
ACCACGACGC GGGCTGCAAT TAGCCAAGGG CATAGTGCAG AGAAGAGCAC TGCCGAATGG
CTGGGCGGCT TGAATCTACC GGAGCCTGGC TCGCCGCTGA CAGTGCAAAT GGAGCATTTA
GGCATGCTTG CAAATCAAGA ACCCGCACGA GTTGCTGAAG TACTCGCTCA TTGGATTGGT
GATAAAGATG CAGACTAA
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| Protein sequence | MSTNVIQSEQ EIQGEIQSPS LFSSAAQGWR RFTQGDKQVM VLALLATVVA SVIVIMLWTA
SQGYRPLYGS QENVETSQVI EVLEAEGIYY RIESHTGLVL VADDQLGKAR MLLAARGVKA
KVPSGMDELD SSSLGTSQFM EQAKYRHGLE GELARSIMSL KNVRSARVHL AIPKRSLFIR
QTPELPTASV MLQLSPGAEL SQSQVEAVVN LVAGSVTGME TSGVKIVDQE GRFLSANINE
DQDMTQARDR QITYTRELEQ NLMHNASSML EAILGPNNFQ VKIAAKVNFN QIEETKEALD
PQSVLVQERT SSDDKNAALA QGIPGALSNQ PPQAAEGDKK DNTRNLRQEA NRQFDVGRSV
RHIRYQQMQL ENISVSVLVN NTVATGLTTD DAELTKLGSM VKDAIGFSSE RGDSFSINAF
AFSVPTVAEF EPLPWWQVED YQAYLRYLIG GLLGLGLILF VLRPLVSHLT FTAKHVDNET
REPETINLAK SAESTTAESN TTTRAAISQG HSAEKSTAEW LGGLNLPEPG SPLTVQMEHL
GMLANQEPAR VAEVLAHWIG DKDAD
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