Gene Sden_3649 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_3649 
Symbol 
ID4020206 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand- 
Start bp4368276 
End bp4368938 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content45% 
IMG OID637957710 
Productflagellar hook capping protein 
Protein accessionYP_564647 
Protein GI91794996 
COG category[N] Cell motility 
COG ID[COG1843] Flagellar hook capping protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAGTGA CTAATGCGAA GGAAAGCCAA GGGAGTCACA CTGCCAATGT ATTGCAGTCC 
CCTGGCAATG ATGCTGCTTC GTTAAAAAAT GAATTTATGA CCTTGATGAT TGCCCAAATC 
AAGAATCAAG ATCCCACCAA ACCTATTGAA AGCGCTGAGT ATGTGTCGCA GTTAGCTCAA 
TTTTCTCAGG TAGAAAGTTT GGAGTACATG CGTAAAAACC AATCATCGCA AATGGTGATG 
ATGGAAAACT TAGGCATAGT GCAGTCGGCT TCACTCATTG GTAAGAGCGC CACTGTGCCA 
GCGTCCAATC TACAGCTCGG TACTGAGCCT ATAGAAGGTA AAGTCTTTTT AGACAATGCC 
GTAGAAGACT TAACCATTGA GGTGGTTAAT CAGCAGGGGC AAGTGGTCCA CAGTTTAAAA 
ATGGGTGCTC AAGGTAAGGG AGATATTCAA TTTGCTTTTG ATCCGACCGC CGCTGGCTTG 
GCTGAGGGCA AATATGAGCT TAAGGCTAAG GCGACTGTCG GTGAATCCGT GCTAATCGCC 
CCGACGTATG TGAAAGCTGA GATAGAGAAA ATCCATTTTT CTAGCGCTTC AGGAATGATG 
ATGGCCGAAA TGAGTAACGG CTTAGGCATA GTTCCTGTGC TAAACATTTC TGAAGTTTCT 
TAA
 
Protein sequence
MQVTNAKESQ GSHTANVLQS PGNDAASLKN EFMTLMIAQI KNQDPTKPIE SAEYVSQLAQ 
FSQVESLEYM RKNQSSQMVM MENLGIVQSA SLIGKSATVP ASNLQLGTEP IEGKVFLDNA 
VEDLTIEVVN QQGQVVHSLK MGAQGKGDIQ FAFDPTAAGL AEGKYELKAK ATVGESVLIA 
PTYVKAEIEK IHFSSASGMM MAEMSNGLGI VPVLNISEVS