| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3626 |
|---|
| Symbol | |
|---|
| ID | 4020183 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 4346726 |
|---|
| End bp | 4348066 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637957687 |
|---|
| Product | coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_564624 |
|---|
| Protein GI | 91794973 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR00538] oxygen-independent coproporphyrinogen III oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGAAA AATACAATTA CAGCGGCCCA AGATATACTT CTTACCCCAC GGCGTTGGAG
TTTGATGACT CATTCACAGA AGATAATCTG CTTGAGGCCA TAAAAACCAG CAAAAGCAAA
ACTTTATCCT TGTATATACA TATCCCTTTC TGTGCCAAAT TATGTTATTA CTGCGGCTGT
AACAAGGTGA TCACTCGCCA TGCACACAAG GCAGATCAGT ACCTAGAATA CCTTGCCAGC
GAAATCATCA AACGAGCACC ATTATTCAAG CATTATCAAG TAACCCAGAT GCATTGGGGC
GGCGGCACGC CGACCTTCTT AACTCCGGCG CAAATATTAT CCTTAACGGC ATTATTAAAG
CAGCACTTCA ATTTTGCCTC CCAAGGCGAG TTCTCCATTG AGATTGATCC AAGAGAAATC
GAGCTCAGCA TGCTCGATAC CCTCAAAGAA GCGGGTTTTA ATCGCATTTC AGTGGGGGTA
CAAGATTTTA ATAAAGAAGT GCAGATAGCG GTCAACCGTG AGCAAGACGA GCAGTTCATT
TTCGATCTTA TCGCTCGGGC TAAAGACTTA GGCTTTGTGT CCACCAATGT GGATTTGATT
TACGGTCTGC CGCTGCAAAC ACCGGCAAGC TTTGCTAAGA CCATAAAACG CATTATTGAG
CTGTCTCCCG ATCGTCTGTC TGTGTTTAAT TATGCTCATT TACCTTCACG TTTCGCCGCC
CAGCGTAAGA TCAAAGATGA ACAATTACCC ACAGCTCAGC AGCGCTTGGA CATTTTACAC
CAGACTATCG AGTCACTAAC TGCTGCGGGT TATCAGTTTA TTGGCATGGA TCATTTTGCT
AAGCCTGATG ATGAACTGGC AAGGTTACAA AGAGAGGGTA AGCTACACCG CAACTTTCAA
GGCTATACCA CTCAAGAAGA ATGTGACTTG CTTGGGCTCG GCGTCTCCTC CATCAGCCAG
ATCGGCGATT GTTATGCGCA AAACCAAAAA GAGTTACAGC TTTACTACCA ATCTATCGAT
ACCAAAGCGC ATGCGTTATG GAAGGGCTGT AGCCTAACTC GTGATGATGA AATTCGCCGT
ATCGTGATAA AGCAGCTGAT TTGTCATTTT GAATTAGATA TTGCCAGTAT TGAAGCCGAG
CTTGGAATAG ATTTTGATGC TTACTTTAGT GAAGATATGA ATCTATTAAA GACTTTTATC
GATGACAAGC TGGTAAGCAT GCAAGATAGA CGCATCACCA TTAGCGCCAC AGGAAGGCTA
CTTATTCGTA ATATTTGCAT GTGCTTTGAT ATTTACTTCC GCCAAAAAGC CCGCCAACAG
CAGTTTTCGC GAGTGATTTA A
|
|---|
| Protein sequence | MIEKYNYSGP RYTSYPTALE FDDSFTEDNL LEAIKTSKSK TLSLYIHIPF CAKLCYYCGC
NKVITRHAHK ADQYLEYLAS EIIKRAPLFK HYQVTQMHWG GGTPTFLTPA QILSLTALLK
QHFNFASQGE FSIEIDPREI ELSMLDTLKE AGFNRISVGV QDFNKEVQIA VNREQDEQFI
FDLIARAKDL GFVSTNVDLI YGLPLQTPAS FAKTIKRIIE LSPDRLSVFN YAHLPSRFAA
QRKIKDEQLP TAQQRLDILH QTIESLTAAG YQFIGMDHFA KPDDELARLQ REGKLHRNFQ
GYTTQEECDL LGLGVSSISQ IGDCYAQNQK ELQLYYQSID TKAHALWKGC SLTRDDEIRR
IVIKQLICHF ELDIASIEAE LGIDFDAYFS EDMNLLKTFI DDKLVSMQDR RITISATGRL
LIRNICMCFD IYFRQKARQQ QFSRVI
|
|---|
| |