| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3620 |
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| Symbol | |
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| ID | 4020177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 4339054 |
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| End bp | 4341819 |
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| Gene Length | 2766 bp |
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| Protein Length | 921 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637957681 |
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| Product | DNA polymerase I |
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| Protein accession | YP_564618 |
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| Protein GI | 91794967 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00307404 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAATAA TCCCAGAAAA CCCCCTCGTC CTTGTGGATG GTTCTTCCTA TCTTTATCGC
GCTTACTACG CACCACCACA TCTAACCAAT TCTAAGGGTG AAGCCACGGG AGCGGTATAC
GGTGTAGTCA ACATGCTTCG CAGCTTAATG AGCCGTTATC ATCCGAGTCA CATTGCCGTG
GTATTTGATG CCAAAGGTAA AACATTTAGA AATGATATGT ACAGCGAGTA CAAGGCGCAG
CGCCCACCCA TGCCTGATGA CTTACGCAGT CAAATCGCCC CTTTGCATAG AATAATCCAC
GCATTAGGCC TACCGCTTAT CAGTATCGAA GGGGTTGAAG CCGATGACGT CATAGGCACC
ATAGCCAAGC GTGCCAGCGC CGAAGGCCGT GCCACCTTGA TAAGCACAGG TGATAAAGAC
ATGGCGCAGC TGGTTAATGA ACATGTCACC CTGATAAATA CCATGACAGA CACCATAATG
GGGCCTGAAG AAGTGGCCAC TAAATTTGGT GTGGGCCCCG AGCTTATCAT AGATTTCTTA
GCCCTGATGG GCGATAAATC CGATAACATT CCAGGTCTAC CGGGTGTTGG TGAAAAAACC
GCACTGGCCA TGTTAAACGG AGTTGGCAGT GTAGAAAAAC TATTAGCCGA TCCCCAAAGC
GTCCTTGAAG TGGGCTTTAG GGGCGCTAAA ACCATGCCAG CAAAAATTAT CGACAATGCT
GACATGCTTA AACTCTCCTA CCAACTGGCC ACCATCAAAA CCGATGTGGA GTTGGATCCC
GACTGGGATC TTCTTGCGGT GAAGCCGCAT AATAAAGATG AGCTTATCGC CTGTTATGGT
GAAATGGAGT TTAAACGCTG GCTAGCTGAA GTATTAGATA ATAAAGCGCC AACCCAAGTT
AAAACATCAT CCAATGCTGA GTCTGACGAA GTGATGGCTC CCGTTGAGGC CATTAGCGCC
AAGTATCACA CCATCTTAAC CCTCGATGAC TTAGATACTT GGATTGCAAA GTTAAGCCAA
GCCAAACTCA TTGCCATAGA CACTGAGACC ACCAGCTTAA ATTACATGGA TGCTAAGCTC
GTGGGGATTT CATTCGCCAT CGAAGCAGGC GAAGCCGCAT ATTTGCCGTT AGCCCATGAT
TATTTAGATG CTCCGAGCCA AATAGACATG GCAACCGCCC TTGAGAAGCT GCGGCCGCTA
CTGGAAAGTG ACAACCCAGC TAAAGTAGGC CAAAACTTAA AGTACGATAT CAGCATTTTC
GCTAATGTGG GCATCAAGCT TAAAGGCGTG CACTTCGATA CCATGCTGGA GTCCTATGTG
TTTAATTCGG TCGCCTCCCG CCATGATATG GATGGGCTTG CCTTAAAGTA CTTAGGCCAT
AAGAACATTA GCTTCGAGGA CGTTGCCGGT AAAGGCGCGA AACAGCTGAC CTTTAATCAA
ATCGATTTAG ACACCGCCGC GCCCTATGCC GCAGAAGATG CCGATATTAC CTTACGTCTG
CATCAACATT TATGGCCAAG GCTTGAGAAA GAGCCAGAAC TGGCCCAAGT GTTCACCGAA
TTAGAATTAC CACTTATTCA AGTTTTATCT GATATCGAGC GCCAAGGGGT ACTTATAGAC
CCTATGCTAT TAAGTCAGCA AAGTGATGAA CTAGCGCAGA AGATTGATAA GTTAGAACTT
GAGGCCTATG AGATAGCCGG TGAGAAATTT AACCTAGGGT CGCCAAAACA GTTGCAAGTC
TTATTCTTTG AAAAATTGGC ATACCCTATC ATCAAGAAGA CCCCCAAAGG TGCGCCATCG
ACGGCTGAAG AGGTGTTAGT CGAACTCGCC TTAGACTACC CCTTGCCCAA GATTATCTTA
GCTCATCGCA GCTTAGCCAA ACTTAAGAGT ACCTACACGG ACAAACTGCC GTTAATGGTC
AATGGCACCA CGGGGCGAGT GCATACCAGC TACCATCAAG CGAATGCCGC GACGGGGCGC
TTATCATCGA GCGATCCAAA CCTTCAAAAC ATTCCAATCC GCACTGAAGA AGGTCGCCGC
ATCAGACAAG CCTTTATCGC GCCGGCTGGG CGTAAAATTT TAGCGGCGGA TTATTCACAA
ATTGAATTAA GGATCATGGC ACATTTATCC CAAGATAAAG GCCTACTCAC CGCCTTTGCC
GAAGGTAAAG ATATTCATAG AGCCACCGCA GCGGAAGTCT TTGGCGCACA TTTTGAAGAA
GTCACCACAG AGCAAAGGCG CCGTGCAAAA GCCGTCAACT TCGGTTTGAT TTATGGCATG
TCGGCCTTTG GCTTGGCTAA GCAGCTGGAT ATTCCTCGCA ACGAAGCACA AACCTATATC
GACACTTATT TCGCCCGCTA TCCTGGGGTA TTACAGTATA TGGAAGAGAC CCGTGCTAGC
GCAGCCGAAT TAGGCTACGT ATCGACCCTG TTTGGCCGCC GCCTGTATCT ACCAGAAATT
CGCGATCGTA ACGCCATGCG CCGCCAAGCT GCAGAAAGGG CTGCCATTAA TGCCCCAATG
CAAGGCACGG CCGCTGACAT CATCAAGAAA GCCATGATCA ACATAGCGAA CTGGATCAAG
ACCGAGACCC AAGGTGAAAT AACCATGATC ATGCAAGTAC ACGATGAACT GGTGTTTGAA
GTGGATGAAG CTCAAGCTGA AACATTAAAA GCCAAAATTT GCTTACTCAT GGCACAAGCC
GCCGATTTGG ATGTCACCCT ATTGGCAGAA GCGGGCATTG GTAATAATTG GGATGAAGCC
CACTAG
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| Protein sequence | MPIIPENPLV LVDGSSYLYR AYYAPPHLTN SKGEATGAVY GVVNMLRSLM SRYHPSHIAV
VFDAKGKTFR NDMYSEYKAQ RPPMPDDLRS QIAPLHRIIH ALGLPLISIE GVEADDVIGT
IAKRASAEGR ATLISTGDKD MAQLVNEHVT LINTMTDTIM GPEEVATKFG VGPELIIDFL
ALMGDKSDNI PGLPGVGEKT ALAMLNGVGS VEKLLADPQS VLEVGFRGAK TMPAKIIDNA
DMLKLSYQLA TIKTDVELDP DWDLLAVKPH NKDELIACYG EMEFKRWLAE VLDNKAPTQV
KTSSNAESDE VMAPVEAISA KYHTILTLDD LDTWIAKLSQ AKLIAIDTET TSLNYMDAKL
VGISFAIEAG EAAYLPLAHD YLDAPSQIDM ATALEKLRPL LESDNPAKVG QNLKYDISIF
ANVGIKLKGV HFDTMLESYV FNSVASRHDM DGLALKYLGH KNISFEDVAG KGAKQLTFNQ
IDLDTAAPYA AEDADITLRL HQHLWPRLEK EPELAQVFTE LELPLIQVLS DIERQGVLID
PMLLSQQSDE LAQKIDKLEL EAYEIAGEKF NLGSPKQLQV LFFEKLAYPI IKKTPKGAPS
TAEEVLVELA LDYPLPKIIL AHRSLAKLKS TYTDKLPLMV NGTTGRVHTS YHQANAATGR
LSSSDPNLQN IPIRTEEGRR IRQAFIAPAG RKILAADYSQ IELRIMAHLS QDKGLLTAFA
EGKDIHRATA AEVFGAHFEE VTTEQRRRAK AVNFGLIYGM SAFGLAKQLD IPRNEAQTYI
DTYFARYPGV LQYMEETRAS AAELGYVSTL FGRRLYLPEI RDRNAMRRQA AERAAINAPM
QGTAADIIKK AMINIANWIK TETQGEITMI MQVHDELVFE VDEAQAETLK AKICLLMAQA
ADLDVTLLAE AGIGNNWDEA H
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