Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_3618 |
Symbol | |
ID | 4020175 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 4337132 |
End bp | 4337974 |
Gene Length | 843 bp |
Protein Length | 280 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637957679 |
Product | rhomboid-like protein |
Protein accession | YP_564616 |
Protein GI | 91794965 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.000228786 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATAGCCA TTGGCCAGCT TGACAATGCC CGTGCGGCGC AGGCATTTAT CGATTATCTC AGAGGTATTG GGATTGATTG TGAGCCTGTG TCCAATGAGC AAGGTGTCAT GCTGGTTATT CACAACGCCG AGCAACAAGC TCAAGCAAAA GCCGAGTTCG AACGCTTTTT GGCTGAACCC TATGCCGATC GTTATTTGAA AGCCTCATGG GACTCGGGTG ATACTAAAGC ACAGTTGGAT TACGGCGCCG CTGGGCTAGG ATTAGTACAA CACTTTATCA CTCAGTCTGG GCCGCTGACC TTAGGGGTAT TTGCAATAAG CCTGCTGCTA TTTGCCCTGA TGAACTTCGG CTTACTCGAA CTGGTATATA CAAGCTTATC GTTTTTTGGC GCCACTCAAG CGATTGATTT AACTCAGGTG TGGCGGGTAT TTACCCCCAG TCTACTGCAC TTTTCCCTTC TACATATTAT GTTCAACTTA CTCTGGTGGT GGTACTTGGG CGGGAAAATT GAGTTAAGAC TCGGTGCACC AAAGCTGCTG GTGTTATTGC TGGTTGCCGG CACTCTGCCG AATATATTGC AGTATTTTAT TAGTGGCCCC AATTTTGGCG GGCTTTCTGG AGTCGTCTAT GCCCTAGTGG GTTACACTTG GTTAATGGGC AAGAGGCGAC CACAATCTGG GCTACAACTT CCCGATTCCT ACATGGGTTT TATGATGTTG TGGTTAGTGC TTGGCTTTAC CGATCTGCTC GGCATGCCCA TAGCCAATGG CGCTCATCTT GGTGGTTTGC TTATTGGGCT GACACAAGCG GCCTTTGACA GCCGCAAGCT CAAAGCCAGC TAA
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Protein sequence | MIAIGQLDNA RAAQAFIDYL RGIGIDCEPV SNEQGVMLVI HNAEQQAQAK AEFERFLAEP YADRYLKASW DSGDTKAQLD YGAAGLGLVQ HFITQSGPLT LGVFAISLLL FALMNFGLLE LVYTSLSFFG ATQAIDLTQV WRVFTPSLLH FSLLHIMFNL LWWWYLGGKI ELRLGAPKLL VLLLVAGTLP NILQYFISGP NFGGLSGVVY ALVGYTWLMG KRRPQSGLQL PDSYMGFMML WLVLGFTDLL GMPIANGAHL GGLLIGLTQA AFDSRKLKAS
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