| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3616 |
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| Symbol | tdh |
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| ID | 4020173 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 4335707 |
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| End bp | 4336735 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637957677 |
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| Product | L-threonine 3-dehydrogenase |
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| Protein accession | YP_564614 |
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| Protein GI | 91794963 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
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| TIGRFAM ID | [TIGR00692] L-threonine 3-dehydrogenase
[TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00121447 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGAAAG CATTAAGTAA ATTAAAAGCC GAAAAAGGCA TTTGGATGGT TGACGCACCA
AAGCCTGTAA TGGGTCACAA CGACCTATTA ATTAAAATTC GTAAAACCGC AATCTGCGGC
ACCGATATGC ACATTTACAA CTGGGACGAA TGGGCACAGA AAACCATACC TGTGCCTATG
GTTGTTGGCC ATGAATATGT CGGTGAAGTT GTCGACATGG GCGTTGAAGT CCGTGGTTTT
ACTGTGGGTG ACCGCGTCTC TGGTGAAGGC CATATTACTT GTGGTCATTG CCGTAACTGC
CGTGGTGGTC GTACTCACCT ATGCCGTAAC ACCACGGGTG TTGGCGTAAA CCGAGAAGGC
TCATTTGCAG AATACTTGGT TATTCCGGCA TTTAACGCCT TTAAAATCCC AGCAGATATC
TCTGACGATC TTGCCGCTAT TTTCGATCCT TTCGGCAATG CCGTGCACAC GGCGCTATCG
TTCGATTTAG TCGGTGAAGA CGTGTTGATC ACAGGCGCTG GCCCCATAGG TATTATGGCT
GCGGCTGTGT GTAAGCACGT CGGTGCTCGC CATGTGGTGA TCACAGATGT AAACGAATAC
CGCCTAGAGC TTGCCCGTAA AATGGGCGCG ACTCGCGCAG TAAACGTCTC TAAAGAAAAC
TTAACCGATG TGATGACAGA GCTTGGCATG ACAGAAGGCT TCGATGTCGG CCTTGAAATG
TCAGGGGTTC CATCAGCGTT TCATGGCATG TTAGATACCA TGAATCACGG CGGTAAAATA
GCCATGTTAG GTATTCCTGG CGGCGAAATG GCTATCGACT GGAGCAAGGT AATCTTCAAA
GGCCTCATCA TCAAAGGCAT CTATGGCCGA GAAATGTTTG AGACCTGGTA CAAGATGGCG
AGCCTTATTC AATCGGGTTT AGATCTATCG CCTATCATCA CTCACCATTT TGCTATCGAT
GACTTCCAGC TAGGCTTTGA AGCCATGGGG TCGGGTCAGT CGGGCAAGGT TATCCTTAAC
TGGGATTAA
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| Protein sequence | MMKALSKLKA EKGIWMVDAP KPVMGHNDLL IKIRKTAICG TDMHIYNWDE WAQKTIPVPM
VVGHEYVGEV VDMGVEVRGF TVGDRVSGEG HITCGHCRNC RGGRTHLCRN TTGVGVNREG
SFAEYLVIPA FNAFKIPADI SDDLAAIFDP FGNAVHTALS FDLVGEDVLI TGAGPIGIMA
AAVCKHVGAR HVVITDVNEY RLELARKMGA TRAVNVSKEN LTDVMTELGM TEGFDVGLEM
SGVPSAFHGM LDTMNHGGKI AMLGIPGGEM AIDWSKVIFK GLIIKGIYGR EMFETWYKMA
SLIQSGLDLS PIITHHFAID DFQLGFEAMG SGQSGKVILN WD
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