Gene Sden_3570 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_3570 
Symbol 
ID4020127 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp4286050 
End bp4286736 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content47% 
IMG OID637957631 
Productheme exporter protein CcmB 
Protein accessionYP_564568 
Protein GI91794917 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG2386] ABC-type transport system involved in cytochrome c biogenesis, permease component 
TIGRFAM ID[TIGR01190] heme exporter protein CcmB 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.0688064 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACAGAG GCATTAGCTA TCGACAAGCA TTCTACACTG TACTGATGCG CGACATAAAA 
ATCGCCATTC GTCACAGAGG GGATATTTTT AATCCGCTGT TGTTTTTCAT ACTCGTAGTT
ACCTTGTTCC CATTAGGTAT AGGGCCTGAG CCCAAGGTAC TCACCCGTAT CGCCCCTGGT
ATTATCTGGG TCGCGGCGTT GCTGGCTTCT ATGTTATCTC TAGAGCGATT ATTTAAAGCC
GATTATAACG ACGGCGCCCT AGAGCAGATG TTACTCAGCC CGCAACCCTT AGCAGTGTTA
GTACTGGCGA AGGTCTTCGC TCATTGGCTA CTCACGGGTG TGCCACTTAT CCTGATATCC
CCCGTCTTAG CACTGTTACT GCAACTTGAA GCGAATTCTT ATGTGGCCCT ACTCCTGACC
TTAAGCTTGG GGACTCCAGT ATTATCCTTA ATGGGCGCCA TAGGGGTTGC ATTGACTGTT
GGGTTAAGAA AAGGTGGAGT GTTACTCAGT CTACTTATCT TGCCCCTTTA TATTCCAGTG
CTCATTTTTG CGACCAGTGC CATGGATGCA GCAGGAATGA ATTTACCCTA TGATGGCCAA
CTGGCTATAA TTGGCGCCAT GTTAGTGGCA GCGTCAGTGT TGGCTCCAAT TGCCATTGGA
GCGTCCTTAA GAGTGAGTAC AAATTAG
 
Protein sequence
MNRGISYRQA FYTVLMRDIK IAIRHRGDIF NPLLFFILVV TLFPLGIGPE PKVLTRIAPG 
IIWVAALLAS MLSLERLFKA DYNDGALEQM LLSPQPLAVL VLAKVFAHWL LTGVPLILIS
PVLALLLQLE ANSYVALLLT LSLGTPVLSL MGAIGVALTV GLRKGGVLLS LLILPLYIPV
LIFATSAMDA AGMNLPYDGQ LAIIGAMLVA ASVLAPIAIG ASLRVSTN