| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3567 |
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| Symbol | |
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| ID | 4020124 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 4283477 |
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| End bp | 4284688 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637957628 |
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| Product | tetratricopeptide region |
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| Protein accession | YP_564565 |
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| Protein GI | 91794914 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4235] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.359938 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCTAT TCTGGATTGC TATCGCCCTC GTCGTTTTTA GTGGTTTATT GCTAATTTGG
ATCCCGCACT TTCGCCAACA GCACTTGTTG CAAACTGAAG CTTCTGGAGT CCGTAAGCAA
ACTAACCTTG AAGTCTTTGC TGAACGTTTA GCTAACCTTG AGCAAGAATT TCAGCAAGGT
CAACTAGAAC AGCAAGAATT TGCGGCACTA AAGCAAGAGT TAGAAGTCAG CTTGTTACAG
GATATCAAAC AAGTTGGCGA TGACTCGCTC GATAACCAAA TCCAAAAGAA AGGCCTATTC
TGGCCATCAC TCATGTCTAT CACTTTATTG GCGCTAAGCG GATACCTCTA CCAGCAGTTA
GGAGCCTATC AACAATTAGC GATACCAATG CAGGCAAATG ATGCTCATTC TGCAATGGGG
CCTGAAATGG CCTTGGGCCA AAGGATTAAA CTTCTTGAAG CTGAAGTGCA AGCTCAACCA
GACAACAGCC AAGCTTGGTT CACTCTAGGA CATGCCTACA TCACTAACAA TCAATATAAC
CAAGCCATCG CGGCATTTGA TAAGGTGATG GAACTCGTTG GCGTACAAGC TGAGCTGCTT
GGGCCTAAAG CCACTGCACT ATATTATCAA GCTGATCAAA CTATTACTGC AGAAACCCAA
GTTATCATAG ATAAAGCATT AGCATTAGAT CCTAAGGATC CTTCGACCTT ATTACTTGTA
GGTATGGATG CATTCTTTAA GGCTAATTAC CCGCAGGCCA TTGATGCATG GCAATTGATA
TTATCTAGCG ATCGTAGCGA TATCGACAGA GGGGCGTTGA TTAACGCTAT CGATGCTGCC
AAAGCGCAAT TACACCTTGG ACCTATCGTC CCTGACGCAT TAAAAGTCAC TGTCACTTTG
GCACCTCAGT TAGCAGACAA ACTAACAGGA ACGGATACCT TATATGTTTT CGCCCGCAGC
CAAACCCAGC CAAAAACACC TTTGTTATTG ACTAAGCTCA CCAAGGTTAG CTTCCCCTTA
AGTGTGACCT TAGATGCAAG CCACGCTATT AACGAGCAAG TTAACACCAC TGGATTAGAG
TCAGTAGAAA TAGTGGTGTT ACTCTCAAAG GGCGGTAGCC TCAAACCACA AACCGGCGAT
ATTCAGGCTA AGCTCGCCAA TGGCAGCTTT AACCAGCTCA ATCAGCTAGT GCTAGAAACT
GAATTGAAAT AA
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| Protein sequence | MTLFWIAIAL VVFSGLLLIW IPHFRQQHLL QTEASGVRKQ TNLEVFAERL ANLEQEFQQG
QLEQQEFAAL KQELEVSLLQ DIKQVGDDSL DNQIQKKGLF WPSLMSITLL ALSGYLYQQL
GAYQQLAIPM QANDAHSAMG PEMALGQRIK LLEAEVQAQP DNSQAWFTLG HAYITNNQYN
QAIAAFDKVM ELVGVQAELL GPKATALYYQ ADQTITAETQ VIIDKALALD PKDPSTLLLV
GMDAFFKANY PQAIDAWQLI LSSDRSDIDR GALINAIDAA KAQLHLGPIV PDALKVTVTL
APQLADKLTG TDTLYVFARS QTQPKTPLLL TKLTKVSFPL SVTLDASHAI NEQVNTTGLE
SVEIVVLLSK GGSLKPQTGD IQAKLANGSF NQLNQLVLET ELK
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