| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3566 |
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| Symbol | |
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| ID | 4020123 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 4281123 |
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| End bp | 4283105 |
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| Gene Length | 1983 bp |
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| Protein Length | 660 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637957627 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_564564 |
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| Protein GI | 91794913 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF
[TIGR03145] cytochrome c nitrate reductase biogenesis protein NrfE |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0145214 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCCTG AACTTGGCCA TTTCTCGCTG ATCTTAGCGT TGGCATTTGC ACTGTTACTT
GCCACTGTGC CCTTGATAGG TGCAGCCTGC AGAGATCAAT ATCTAGTGCG CTATGCTCGG
CCCCTATGTT ACGGCATGTT CGCTTTTGTC AGTCTATCAA TTATTAGTTT AGGTTATAGC
TTTGCGGTGG ATGATTTCTC CGTTGCCTAT GTGGCTCATC ACTCTAACTC CCAGTTACCT
ATTTTCTTCA AAATTTCAGC AGTGTGGGGC GGACACGAAG GCTCACTACT GTTTTGGGTG
TTTGCACTTT CAGTATGGTC TGTGGCCGTC GCATTATTCA GTAAGCAGAT TGAAGAAGTG
TTCACCGCTA GGGTGTTGTC GGTACTGGCG ATAGTGATTG TTGGTTTTAC CTTCTTTATG
TTACTTACCT CTAACCCTTT CGAGCGGCTT TTTCCTATTC CTATGGAAGG CCGAGATTTG
AATCCTATGT TGCAAGATAT TGGGCTTATC TATCATCCTC CTATGCTTTA TATCGGTTAT
GTAGGCTTTG CCGTTAGCTT TGCTTTTGCG ATTGCAGCAT TAATGAGTGG CCGACTCGAT
TCAGCATGGG CGCGCTGGAC TCGTCCATGG ACTCTCGCTG CTTGGGTATT TCTCACCGGA
GGTATAGCGT TAGGTTCTTG GTGGGCTTAT TACGAACTCG GTTGGGGTGG TTGGTGGTTC
TGGGACCCCG TGGAAAACGC TTCCTTTATG CCGTGGCTCG TGGGTACCGC ATTAGTACAC
TCATTGATAG TGACAGAGAA GCGCAGTGCC TTTAGAAACT GGACTGTACT ACTGTCGATA
TCAGCATTTT CATTGAGTTT GCTGGGCACC TTTATTGTTC GTTCTGGGGT GCTGACTTCA
GTGCATTCAT TTGCATCCGA TCCTAGTCGT GGGGTGTTTA TTCTATTACT GCTCGCCTTG
ACTGTTGGCG GCTCACTAAC CCTATTTGCT TTTAGAGCTA GCGATATGGC AAGTCCTGCA
CGTTTTGAGC TTAAATCAAA AGAGACTATG CTGCTTATCT GTAATGTTTT GCTCGCCGTT
GCAACCGGTA CCGTTTTACT GGGTACCCTT TATCCTCTAC TGATTGATGC TTTAAACATG
GGCAAGATCT CCGTAGGCCC ACCTTATTTT AATGCGGTGT TTGTGCCTTT GGTGCTTATC
TTGTTTGGCT TTATGGGTAT AGGTCCGATT ATTCGTTGGA AAAAATCTAA AGCTGGCGAG
CTCAAGCGTC AACTGCTATT GCCTGCAATG ATAGCGGTAG CCTTAGGCGT TACACTGCCA
TTTATCATTG CTGAAGGTGA ATTCGATATC TGGGTTGCAT TTGGTTTAGG CATGGCAAGT
TGGATAATCT TAGCTACTTT CAGGGCTGGT TATAATATGG CGCGAGGAAG TAGCTCGAAT
ATTGATCTTC GCCGCATAGG CAGAAGCCAA TGGGGTATGA TCATCGCCCA CTTAGGTATT
GCCGTCTCAG TGATTGGCGC GACTATGGTG TCTAATTACT CCATCGAGAA AAGTGTGCGT
ATGGGGCCAG GCGTGAGCTA TGAATTAGCA GGCTACCAAT TTAAGTTTAT CGATACTCGT
CATATTGTCG GCCCTAACTA TACCGCTGAA CAAGCTCAGA TAGAGATTTA TCAGCAGGGC
GAGTTTGTGG CTTTAGTACA GCCAGATAGA CGTCAATATA ATGTACGTAC CATGGATATG
ACTGAAGCCG GTATCGATTG GGGGCTGTTT AGGGATCTTT ATGTGACTAT GGGTGATCCC
ATCAGCACTA CGGAATTTGC GGTGCGGTTA AATTATAAGC CTTTTGTGCG CTGGTTATGG
TTTGGTGCGA TTTTCATGAT GGTCGGCGGA CTATTAGCTG CGTCAGACAA GCGCTATCGT
CGTAAAGTGA GCGTTGCACA AGCGGACACT CACGCTAATC CTAAATTCGC ACCAGCGCTA
TAA
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| Protein sequence | MIPELGHFSL ILALAFALLL ATVPLIGAAC RDQYLVRYAR PLCYGMFAFV SLSIISLGYS
FAVDDFSVAY VAHHSNSQLP IFFKISAVWG GHEGSLLFWV FALSVWSVAV ALFSKQIEEV
FTARVLSVLA IVIVGFTFFM LLTSNPFERL FPIPMEGRDL NPMLQDIGLI YHPPMLYIGY
VGFAVSFAFA IAALMSGRLD SAWARWTRPW TLAAWVFLTG GIALGSWWAY YELGWGGWWF
WDPVENASFM PWLVGTALVH SLIVTEKRSA FRNWTVLLSI SAFSLSLLGT FIVRSGVLTS
VHSFASDPSR GVFILLLLAL TVGGSLTLFA FRASDMASPA RFELKSKETM LLICNVLLAV
ATGTVLLGTL YPLLIDALNM GKISVGPPYF NAVFVPLVLI LFGFMGIGPI IRWKKSKAGE
LKRQLLLPAM IAVALGVTLP FIIAEGEFDI WVAFGLGMAS WIILATFRAG YNMARGSSSN
IDLRRIGRSQ WGMIIAHLGI AVSVIGATMV SNYSIEKSVR MGPGVSYELA GYQFKFIDTR
HIVGPNYTAE QAQIEIYQQG EFVALVQPDR RQYNVRTMDM TEAGIDWGLF RDLYVTMGDP
ISTTEFAVRL NYKPFVRWLW FGAIFMMVGG LLAASDKRYR RKVSVAQADT HANPKFAPAL
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