| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3565 |
|---|
| Symbol | |
|---|
| ID | 4020122 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 4280558 |
|---|
| End bp | 4281112 |
|---|
| Gene Length | 555 bp |
|---|
| Protein Length | 184 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637957626 |
|---|
| Product | periplasmic protein thiol |
|---|
| Protein accession | YP_564563 |
|---|
| Protein GI | 91794912 |
|---|
| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0526] Thiol-disulfide isomerase and thioredoxins |
|---|
| TIGRFAM ID | [TIGR00385] periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0000644291 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGT TAATTTTATT TGTGCCATTA ATGATCTTTT TAGGCATGGG CTTTTTTCTC
TATAAAGGAT TATTTCTCAA TCCTAAGGTG CTGGAGTCGG CTTTAGAAGG TAAGCTGGTG
CCGTACTTTG AGTTGGAGCA ATTAGAGCAA TCTGACAAAG TGATTACCAA TAAAGATCTT
ATCGGTAAAG TTGCCATGCT AAACGTATGG GGCACTTGGT GTCCTGCATG TAAGTACGAG
CATCCTTATT TAATGGTGCT TGCCCGTAAC AAGCAAATTC CCATTTACGG TATTAACTAT
CGTGACGAAC GAGATATGGC ACTGGAGGAG TTAAAACTTC AAGGTAACCC CTATGAAATT
AACATTTTCG ACAAAGATGG CCGTCTTGGA TTGGATCTTG GCGTTTATGG TGCGCCTGAA
AGTTTTCTTA TCGATCACCA AGGCATAGTC AGATACCGTT TTGCAGGGCC TATCGATCAG
CGTATATGGG CCGATACCTT ATATCCAATA GTTAAAACTT TGCAGGAGCA AGCTGTAAAA
GATGGAGCCT CATAG
|
|---|
| Protein sequence | MKKLILFVPL MIFLGMGFFL YKGLFLNPKV LESALEGKLV PYFELEQLEQ SDKVITNKDL
IGKVAMLNVW GTWCPACKYE HPYLMVLARN KQIPIYGINY RDERDMALEE LKLQGNPYEI
NIFDKDGRLG LDLGVYGAPE SFLIDHQGIV RYRFAGPIDQ RIWADTLYPI VKTLQEQAVK
DGAS
|
|---|
| |