| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3550 |
|---|
| Symbol | |
|---|
| ID | 4020104 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 4260894 |
|---|
| End bp | 4262138 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637957608 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_564548 |
|---|
| Protein GI | 91794897 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.013577 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTTTAA GGGATTTGTC AGCACCAGTG AGACAGTATT TGCTGATCAC CAGCAATTAT
TGGGCGTTTA CCTTAACCGA TGGTGCGCTG CGCATGCTGG TGGTGCTGTA TTTTCATCAG
TTAGGCTACA GCCCACTTAG CATTGCCATG CTATTTCTGT TCTATGAAAT CTTCGGCGTG
GTGACTAATT TAGTCGGCGG CTGGTTAGGG GCAAGGCTTG GGCTGAATCG CACCATGAAC
ATTGGCTTAG GGCTGCAGGT CTTGGCCCTC TCCATGCTGA CTGTGCCTAA TGAGTTTTTG
ACCGTGGCCT ATGTGATGGC GGCGCAGGCT TTGTCTGGGA TAGCTAAAGA TCTCAATAAA
ATGAGTGCCA AGAGCGCCAT TAAACTGCTG GTGCCAGCGG GGGCAGAAGG TAAGTTATAT
CGCTGGGTTG CCCTGCTGAC GGGCTCTAAG AATGCATTAA AAGGCGTGGG CTTTTTCTTA
GGCGGCCTGC TATTGAGCTT GTTTGAGTTT CGCGGCGCCA TACTATTGAT GGCAGGTCTA
TTAACGCTGG TGTGGCTATT AAGTTTAGTC AGCTTAAAGC AAGAGTTAGG CAAAGCGAAA
AATAAGCCAA AATTCAACGA GCTATTTTCT AAAAGCCGGG CGATAAACTT GCTGTCGGCG
GCGCGCTTGT TTTTGTTTGG TGCGCGCGAT GTGTGGTTTG TGGTGGCGCT ACCTGTGTAT
CTGGCGGCGC AATTTAATTG GCAAGCCAGC TGGGTGGGCG GCTTTATGGC GAGCTGGGTC
ATAGGCTATG GCATAGTGCA AACCTTGGCA CCTAGACTCA CAGGCAGGGG CAAAGGGGAC
GTAAGTGGTA ACCGCACAAG CCAAAACCAA GCCCCAAGCG CCAGTACAGC CTTCAGCTGG
GCCTGTTATC TCGCCTTTAT TCCTGGGTTA ATCGCCCTAG CGCTGCAGTG GGATTTTTAT
GCGCAAGCCT CGCTTATCAT GGGGTTACTC TTGTTCGGTG TGGTGTTTGC CATTAACTCA
TCGCTGCACA GTTACTTGAT TGTAAGCTTT GCCGACACTG ATGGCGTGTC ATTGGATGTG
GGCTTTTATT ATATGGCCAA TGCCATGGGG CGCCTCATAG GCACAGTATT GTCGGGCTGG
GTGTATCAAG TCCATGGGCT AGAGGCCTGT TTGTGGATAT CGAGTCTGTT CGTCATCTTA
GCTGCCTTGG TGACGTCACG ACTAAAGCTT AAATCTAGGT GTTAG
|
|---|
| Protein sequence | MGLRDLSAPV RQYLLITSNY WAFTLTDGAL RMLVVLYFHQ LGYSPLSIAM LFLFYEIFGV
VTNLVGGWLG ARLGLNRTMN IGLGLQVLAL SMLTVPNEFL TVAYVMAAQA LSGIAKDLNK
MSAKSAIKLL VPAGAEGKLY RWVALLTGSK NALKGVGFFL GGLLLSLFEF RGAILLMAGL
LTLVWLLSLV SLKQELGKAK NKPKFNELFS KSRAINLLSA ARLFLFGARD VWFVVALPVY
LAAQFNWQAS WVGGFMASWV IGYGIVQTLA PRLTGRGKGD VSGNRTSQNQ APSASTAFSW
ACYLAFIPGL IALALQWDFY AQASLIMGLL LFGVVFAINS SLHSYLIVSF ADTDGVSLDV
GFYYMANAMG RLIGTVLSGW VYQVHGLEAC LWISSLFVIL AALVTSRLKL KSRC
|
|---|
| |