Gene Sden_3525 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_3525 
Symbol 
ID4020079 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand+ 
Start bp4216288 
End bp4216941 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content49% 
IMG OID637957583 
Productelectron transport protein SCO1/SenC 
Protein accessionYP_564523 
Protein GI91794872 
COG category[R] General function prediction only 
COG ID[COG1999] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones47 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAAAAAAC TGATTATTTC ATTCATTTTA CTCTTCGGTA TTGGCGGCGC AGCCTTAGTG 
GCGCTATCGC CATCCAAGGC GGTGAACACA AGCCCATTGA CCTTAAGCAG CGGCTACCTT 
TTCGAGCAGC CTAGGGGCTT AGCGCCCTTT AGCCTCGAAG ATCAGTCAGG GGCTGAATTT 
ACCCAAGCAG ATTTTGCCGG TAAATGGAGC CTAGTGTTCG TGGGCTACAC CTCCTGCCCC 
GACGTCTGCC CCACTACCCT GTCTAAGCTT GCGGCCCTGT TCCCTAAGCT TCAAGCCGTC 
AGCAAGGTGC CAGTTCAAGT GGTATTTGTC TCGGCAGATC CCGCCCGGGA TACCCAGCAG 
AAACGCTTAG ATTACATTAA TTTTTTCAAC TCTGAATTTA AAGCCGTCAC TGCCCCACAC 
GCTAAACTGT TTCCCTTTAG TCGGGATTTA GGATTTGCCT ATGCCATGGT CGGTGATGGC 
GATGATTACC AAGTAGATCA CAGTGCATCC TATGTCTTAG TGTCACCTAA AGGGGAGAAG 
TTTGCGGTAT TCAAACCTAA GCCTGTGCTG GGGCAGATGG GCCAAATTGA TCACAAGGAA 
TTACTGGCCG ATTTGGAGCA AATTTTTAAC CGCTATTCAA ACAGCGAAGC ATAA
 
Protein sequence
MKKLIISFIL LFGIGGAALV ALSPSKAVNT SPLTLSSGYL FEQPRGLAPF SLEDQSGAEF 
TQADFAGKWS LVFVGYTSCP DVCPTTLSKL AALFPKLQAV SKVPVQVVFV SADPARDTQQ 
KRLDYINFFN SEFKAVTAPH AKLFPFSRDL GFAYAMVGDG DDYQVDHSAS YVLVSPKGEK 
FAVFKPKPVL GQMGQIDHKE LLADLEQIFN RYSNSEA