| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3487 |
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| Symbol | |
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| ID | 4020041 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 4174220 |
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| End bp | 4175527 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637957545 |
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| Product | peptidase M20D, amidohydrolase |
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| Protein accession | YP_564485 |
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| Protein GI | 91794834 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1473] Metal-dependent amidase/aminoacylase/carboxypeptidase |
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| TIGRFAM ID | [TIGR01891] amidohydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00054557 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACCCTA GTTCAATTGC GTTATTGCTG ACTAGCTCCT TAGTTGGTCT TGCAAGTTTA
AGTACAGATA TGGCCCATGC GGCCACGCCC ACCGCCGCTG AACTCACGGC TCAGGTTGAG
CAAAAAGTCA TCACATGGCG CAGGGACTTG CATCAACATC CTGAATTATC AAATCGTGAA
TTTCGCACCA GTAAAGTCAT CGAAAAACAC CTTAAATCCC TCGGTTTAGA AGTCGAAACT
GGCGTGGCCC ATACCGGTGT GGTGGCCATC TTAAAGGGCG GCAAGCCTGG GCCACTCATT
GGCCTGCGTG CGGATATGGA TGCTTTGCCT GTTACCGAAG TGGTGGACTT GCCTTTTGCC
TCTAAAGCGA AAGATAAATA TCGCGGTCAA GATGTTGGGG TAATGCATGC TTGTGGTCAT
GACACTCATG TTGCCATGTT AATGGGTGTG GCTGAAAATC TTGTTAAGGT GAAAGACAGC
CTAGCAGGGG ACGTGATGTT TATCTTCCAG CCTGCAGAAG AAGGCGCGCC AGAAGGTGAA
GAAGGCGGGG CGCAATTGAT GCTTAAACAA GGCTTATTTG CTAAGCGTAA ACCTGACCAA
GTCTTTGGTA TGCATGTGAC CTCTAGCATG CCAGCTGGCA TGATTGGCCT GCGCTCAGGC
CCTGCCATGG CCAGTGAAGA CTCTTTTACT ATCAAGGTCA CTGGCCGTCA GACCCATGGC
TCACGCCCTT GGGCTGGGGT TGACCCTATT GTTGCTGCGG CGCAAATTAT TACTGGGGTG
CAGACCATCA TCAGCCGTCA GGTGGATGTG ACCAAGGCGC CCGCTGTGGT GAGTTTTGGT
GCGATTAATG GCGGTATTCG CTCTAATATT ATTCCTGATG AGGTTGAACT GATTGGGACT
ATTCGCACCT TCGATCAACC CATGCGCGCC GAAATCAAAC TAAAGCTTGC CGAAATTGCC
GAGCTACAAG CTAAAACCCT TGGTGCCACG GCGACCACCA CCATAGAGGA AGGCTACCCT
GTCACTGTGA ATAACCCAGA GCTGGTGGCA TTAATGCGCC CAGTGGTTGA GTCTGTGGTA
GGTAAGGCTA ACTTAATCGA GCCAGGGCTG ATTACTGGGG CTGAAGACTT CTCTTATTAC
GCTTTGGAAA CCCCAGGGAT GTTTTTCTTT CTTGGGGTAA CCCCAAGGGA TCAAGATCAT
AAAACCGCGC CTAGCAATCA TTCGCCGTCA TTTTTTGTGG ATGAAAGCGC CTTAAAGGTT
GGGGTGCAGA CCATGACTCA GGTGGCCTTA AGCGCACTGG GTCAATAA
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| Protein sequence | MHPSSIALLL TSSLVGLASL STDMAHAATP TAAELTAQVE QKVITWRRDL HQHPELSNRE
FRTSKVIEKH LKSLGLEVET GVAHTGVVAI LKGGKPGPLI GLRADMDALP VTEVVDLPFA
SKAKDKYRGQ DVGVMHACGH DTHVAMLMGV AENLVKVKDS LAGDVMFIFQ PAEEGAPEGE
EGGAQLMLKQ GLFAKRKPDQ VFGMHVTSSM PAGMIGLRSG PAMASEDSFT IKVTGRQTHG
SRPWAGVDPI VAAAQIITGV QTIISRQVDV TKAPAVVSFG AINGGIRSNI IPDEVELIGT
IRTFDQPMRA EIKLKLAEIA ELQAKTLGAT ATTTIEEGYP VTVNNPELVA LMRPVVESVV
GKANLIEPGL ITGAEDFSYY ALETPGMFFF LGVTPRDQDH KTAPSNHSPS FFVDESALKV
GVQTMTQVAL SALGQ
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