| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3458 |
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| Symbol | |
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| ID | 4020012 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 4138983 |
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| End bp | 4140383 |
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| Gene Length | 1401 bp |
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| Protein Length | 466 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637957516 |
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| Product | nitrogen regulation protein NR(I) |
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| Protein accession | YP_564456 |
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| Protein GI | 91794805 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR01818] nitrogen regulation protein NR(I) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00165612 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGAAC AAGTTTGGAT CCTCGACGAT GACAGCTCAA TACGTTGGGT ATTAGAAAAA
GCCTTACACA GTGCCAAGCT TAGCACCGCA AGTTTTGCGG CGGCAGAGTC CCTATGGCAA
GCCCTAGACG TCGCTCAGCC ACAGGTTATT ATCTCTGACA TTCGCATGCC AGGCACAGAT
GGCTTGACGC TTTTAGATCG CTTGCAGCTG CATTATCCGC ATATTCCGGT GATCATCATG
ACGGCCCACT CGGATCTCGA CAGCGCCGTC AGCGCCTATA AAGCCGGTGC ATTTGAATAC
CTGCCTAAAC CCTTCGATAT CGATGAAGCC ATTGCGCTTG CGGAACGTGC CCTCGCCCAT
CGCAAAGAAC AAGCCAGCGC CCCCATTGTT GAAAGCCAAG TCAAGACACC GGAAATCATC
GGTGAAGCGC CGGCGATGCA GGAAGTGTTT CGCGCCATCG GCCGGCTATC TCGCTCCTCC
ATTAGCGTGT TGATTAATGG CCAGTCGGGC ACAGGTAAAG AATTGGTGGC GGGTGCACTG
CATAAACACA GCCCCCGCAA AGACAAGCCG TTTATCGCGC TTAATATGGC GGCTATCCCT
AAGGATTTGA TTGAGTCTGA ATTGTTTGGC CACGAAAAGG GCGCCTTTAC TGGCGCTTCA
TCTGTGCGCC AAGGTCGCTT CGAACAAGCC AATGGCGGCA CCTTGTTTTT AGATGAAATT
GGCGACATGC CTCAAGAAGT GCAAACCCGC TTACTCAGAG TCTTGGCCGA TGGTCAGTTT
TATCGGGTGG GAGGGCACAA TGTGGTGAAA GTGGATGTTC GCATCATAGC CGCCACTCAC
CAAAATTTAG AGCAAGCGGT CGAGCAAGGG CAATTTCGCG AAGATTTATT TCATCGCCTC
AATGTTATCC GCATTCATCT GCCGCCCTTG TCCCAGCGCC GCGAAGATAT CGCCCAATTG
ACTAAGCATT TTCTTACCAG CGCCGCCAAG GAGATGGGGG TCGAAGCCAA AGTGCTCGCC
AAGGAAACCG CTATCAAGTT GGCGCAATTA CCTTGGCCGG GTAACGTCAG ACAATTAGAA
AATACCTGCC GCTGGCTCAC TGTGATGGCA TCCGGTCAGG AAGTATTGCC GCAAGATTTA
CCACCAGAAC TAATAAAGCC CACCGCCAAT GTTAGCCAAG TGCACGAGAC TGCCGACTGG
CAGAGCGCGC TCATCTTGTG GCTTGAAACC CAATTGGCCG CGGGACAAAC CAACTTGTTG
ACCGACATTC AACCCGAGTT TGAGCGTATT CTGCTCACCA CGGCGCTGAA ACATACCTCA
GGTCATAAAC AGGATGCCGC CAAGCATTTA GGCTGGGGTC GTAATACCTT GACGCGTAAG
CTTAAAGACC TATCACTGTG A
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| Protein sequence | MSEQVWILDD DSSIRWVLEK ALHSAKLSTA SFAAAESLWQ ALDVAQPQVI ISDIRMPGTD
GLTLLDRLQL HYPHIPVIIM TAHSDLDSAV SAYKAGAFEY LPKPFDIDEA IALAERALAH
RKEQASAPIV ESQVKTPEII GEAPAMQEVF RAIGRLSRSS ISVLINGQSG TGKELVAGAL
HKHSPRKDKP FIALNMAAIP KDLIESELFG HEKGAFTGAS SVRQGRFEQA NGGTLFLDEI
GDMPQEVQTR LLRVLADGQF YRVGGHNVVK VDVRIIAATH QNLEQAVEQG QFREDLFHRL
NVIRIHLPPL SQRREDIAQL TKHFLTSAAK EMGVEAKVLA KETAIKLAQL PWPGNVRQLE
NTCRWLTVMA SGQEVLPQDL PPELIKPTAN VSQVHETADW QSALILWLET QLAAGQTNLL
TDIQPEFERI LLTTALKHTS GHKQDAAKHL GWGRNTLTRK LKDLSL
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