Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_3458 |
Symbol | |
ID | 4020012 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 4138983 |
End bp | 4140383 |
Gene Length | 1401 bp |
Protein Length | 466 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637957516 |
Product | nitrogen regulation protein NR(I) |
Protein accession | YP_564456 |
Protein GI | 91794805 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR01818] nitrogen regulation protein NR(I) |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00165612 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGAAC AAGTTTGGAT CCTCGACGAT GACAGCTCAA TACGTTGGGT ATTAGAAAAA GCCTTACACA GTGCCAAGCT TAGCACCGCA AGTTTTGCGG CGGCAGAGTC CCTATGGCAA GCCCTAGACG TCGCTCAGCC ACAGGTTATT ATCTCTGACA TTCGCATGCC AGGCACAGAT GGCTTGACGC TTTTAGATCG CTTGCAGCTG CATTATCCGC ATATTCCGGT GATCATCATG ACGGCCCACT CGGATCTCGA CAGCGCCGTC AGCGCCTATA AAGCCGGTGC ATTTGAATAC CTGCCTAAAC CCTTCGATAT CGATGAAGCC ATTGCGCTTG CGGAACGTGC CCTCGCCCAT CGCAAAGAAC AAGCCAGCGC CCCCATTGTT GAAAGCCAAG TCAAGACACC GGAAATCATC GGTGAAGCGC CGGCGATGCA GGAAGTGTTT CGCGCCATCG GCCGGCTATC TCGCTCCTCC ATTAGCGTGT TGATTAATGG CCAGTCGGGC ACAGGTAAAG AATTGGTGGC GGGTGCACTG CATAAACACA GCCCCCGCAA AGACAAGCCG TTTATCGCGC TTAATATGGC GGCTATCCCT AAGGATTTGA TTGAGTCTGA ATTGTTTGGC CACGAAAAGG GCGCCTTTAC TGGCGCTTCA TCTGTGCGCC AAGGTCGCTT CGAACAAGCC AATGGCGGCA CCTTGTTTTT AGATGAAATT GGCGACATGC CTCAAGAAGT GCAAACCCGC TTACTCAGAG TCTTGGCCGA TGGTCAGTTT TATCGGGTGG GAGGGCACAA TGTGGTGAAA GTGGATGTTC GCATCATAGC CGCCACTCAC CAAAATTTAG AGCAAGCGGT CGAGCAAGGG CAATTTCGCG AAGATTTATT TCATCGCCTC AATGTTATCC GCATTCATCT GCCGCCCTTG TCCCAGCGCC GCGAAGATAT CGCCCAATTG ACTAAGCATT TTCTTACCAG CGCCGCCAAG GAGATGGGGG TCGAAGCCAA AGTGCTCGCC AAGGAAACCG CTATCAAGTT GGCGCAATTA CCTTGGCCGG GTAACGTCAG ACAATTAGAA AATACCTGCC GCTGGCTCAC TGTGATGGCA TCCGGTCAGG AAGTATTGCC GCAAGATTTA CCACCAGAAC TAATAAAGCC CACCGCCAAT GTTAGCCAAG TGCACGAGAC TGCCGACTGG CAGAGCGCGC TCATCTTGTG GCTTGAAACC CAATTGGCCG CGGGACAAAC CAACTTGTTG ACCGACATTC AACCCGAGTT TGAGCGTATT CTGCTCACCA CGGCGCTGAA ACATACCTCA GGTCATAAAC AGGATGCCGC CAAGCATTTA GGCTGGGGTC GTAATACCTT GACGCGTAAG CTTAAAGACC TATCACTGTG A
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Protein sequence | MSEQVWILDD DSSIRWVLEK ALHSAKLSTA SFAAAESLWQ ALDVAQPQVI ISDIRMPGTD GLTLLDRLQL HYPHIPVIIM TAHSDLDSAV SAYKAGAFEY LPKPFDIDEA IALAERALAH RKEQASAPIV ESQVKTPEII GEAPAMQEVF RAIGRLSRSS ISVLINGQSG TGKELVAGAL HKHSPRKDKP FIALNMAAIP KDLIESELFG HEKGAFTGAS SVRQGRFEQA NGGTLFLDEI GDMPQEVQTR LLRVLADGQF YRVGGHNVVK VDVRIIAATH QNLEQAVEQG QFREDLFHRL NVIRIHLPPL SQRREDIAQL TKHFLTSAAK EMGVEAKVLA KETAIKLAQL PWPGNVRQLE NTCRWLTVMA SGQEVLPQDL PPELIKPTAN VSQVHETADW QSALILWLET QLAAGQTNLL TDIQPEFERI LLTTALKHTS GHKQDAAKHL GWGRNTLTRK LKDLSL
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