Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_3455 |
Symbol | |
ID | 4020009 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 4135179 |
End bp | 4136990 |
Gene Length | 1812 bp |
Protein Length | 603 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637957513 |
Product | GTP-binding protein TypA |
Protein accession | YP_564453 |
Protein GI | 91794802 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG1217] Predicted membrane GTPase involved in stress response |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR01394] GTP-binding protein TypA/BipA |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000132117 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCTAGAGA ATTTACGTAA CATCGCCATT ATTGCCCACG TTGACCATGG TAAAACAACC TTGGTAGACA AATTGTTGGC GCAGTCAGGA ACCCTTGCAT CTCGTGGAGA AGCTACTGAG CGGGTTATGG ATTCTAACGA TCTTGAAAAA GAACGTGGTA TCACCATTCT GGCAAAAAAC ACTGCTATTA AGTGGAATGA CTACCGCATC AACATCGTTG ACACCCCAGG TCACGCCGAC TTCGGTGGTG AGGTAGAACG TGTTCTATCT ATGGTTGACT CAGTATTGCT ACTGGTTGAC GCAGTTGATG GCCCAATGCC ACAAACTCGC TTCGTAACTA AGAAAGCCTT TGCTCAAGGC CTTAAACCAA TCGTTGTTAT CAACAAGATT GACCGCCCAG GTGCGCGTCC TGATTGGGTT ATTGACCAAG TATTCGACCT ATTCGACAAC TTAGGTGCAA CTGACGAGCA GTTAGATTTC CCAATTGTAT ATGCATCAGC ATTAAATGGT TTCGCGACGT TAGATCCAGA TGTCGTTAGC GAAGACATGA CTCCACTTTT CCAAACCATC GTTGAGAAAG TCTCTTTCCC TGACGCTGAC GCGGAAGGTG CATTCCAGAT GCAAATTTCT CAAATCGACT ACAACTCATA CGTGGGTGTT ATCGGTATCG GTCGCATCAA CCGTGGTAGC GTTAAGACCA ACCAGCAAGT CACTATTATT GGCGCTGATG GCAAAACCCG TAACGGTAAA ATGGGCCAAG TATTAGGTTA CATGGGTCTT GACCGTCACG AAGTAGACAT TGCAAACGCT GGTGACATCG TTGCGATTAC AGGCCTAGGC GAGCTTAAGA TTTCTGACAC CATCTGTGCC GTTGGTGCCG TTGAAGCTAT GCCGCCGTTA ACTGTTGATG AACCAACACT GACAATGACG TTCCAAGTAA ACACTTCTCC GTTCGCGGGT AAAGAAGGTA AGTATGTGAC TTCACGTAAC ATTCTTGAGC GTTTACAAAC TGAATTAGTT CACAACGTAG CACTACGTGT TGAAGAAACT GAATCTCCAG ATCGTTTCCG TGTATCAGGC CGTGGTGAAT TACACCTTTC AATCTTGATT GAAAACATGC GTCGTGAAGG TTACGAGTTA GCCGTATCGC GCCCAGAAGT AATTCTTAAG ACTATCGACG GTGAACTTTG TGAGCCATTC GAAACGTTAA CTGTTGACGT TGAAGAAGAA GATCAAGGAT CTGTTATCGA GAAATTGGGT ATCCGTAAAG CTGAAATGAA AGACATGCAG CTTGATGGTA AAGGTCGTGT ACGTATCGAC TTCATCATCC CAAGCCGTGG TTTAATCGGT TTCCAAACTG AATTCTTAAC TGCTACTTCT GGTACTGGTT TGATTTACCA CTCGTTTGAT CACTATGCAC CGCACAAAGG TGGTGACATT GGTCAACGCG CTAACGGCGT ATTGATTTCA AACGCTACCG GTAAAGCATT AACCTTCGCA TTATTTGGTC TACAAGACCG TGGTCGCCTC TTTATTGGCC ACGCTGCTGA AGTATATGAA GGCCAAGTTG TTGGTATTCA CGCTCGCTCT AACGATCTAA CAGTTAACTG TTTGAAAGGT AAGCAGCTAA CCAACATGCG TGCTTCTGGT ACTGACGAAG CGCAAGTACT GACTCCGCCA ATCAACATGT CACTTGAGCA AGCGCTTGAG TTCATCGATG ATGACGAATT AGTCGAAGTC ACGCCTAAGA ACATCCGTGT TCGTAAGAGA TTCTTAACTG AAAACGAACG TAAGCGTCAT AACCGTAGCT AA
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Protein sequence | MLENLRNIAI IAHVDHGKTT LVDKLLAQSG TLASRGEATE RVMDSNDLEK ERGITILAKN TAIKWNDYRI NIVDTPGHAD FGGEVERVLS MVDSVLLLVD AVDGPMPQTR FVTKKAFAQG LKPIVVINKI DRPGARPDWV IDQVFDLFDN LGATDEQLDF PIVYASALNG FATLDPDVVS EDMTPLFQTI VEKVSFPDAD AEGAFQMQIS QIDYNSYVGV IGIGRINRGS VKTNQQVTII GADGKTRNGK MGQVLGYMGL DRHEVDIANA GDIVAITGLG ELKISDTICA VGAVEAMPPL TVDEPTLTMT FQVNTSPFAG KEGKYVTSRN ILERLQTELV HNVALRVEET ESPDRFRVSG RGELHLSILI ENMRREGYEL AVSRPEVILK TIDGELCEPF ETLTVDVEEE DQGSVIEKLG IRKAEMKDMQ LDGKGRVRID FIIPSRGLIG FQTEFLTATS GTGLIYHSFD HYAPHKGGDI GQRANGVLIS NATGKALTFA LFGLQDRGRL FIGHAAEVYE GQVVGIHARS NDLTVNCLKG KQLTNMRASG TDEAQVLTPP INMSLEQALE FIDDDELVEV TPKNIRVRKR FLTENERKRH NRS
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