Gene Sden_3455 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_3455 
Symbol 
ID4020009 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp4135179 
End bp4136990 
Gene Length1812 bp 
Protein Length603 aa 
Translation table11 
GC content45% 
IMG OID637957513 
ProductGTP-binding protein TypA 
Protein accessionYP_564453 
Protein GI91794802 
COG category[T] Signal transduction mechanisms 
COG ID[COG1217] Predicted membrane GTPase involved in stress response 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR01394] GTP-binding protein TypA/BipA 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000132117 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCTAGAGA ATTTACGTAA CATCGCCATT ATTGCCCACG TTGACCATGG TAAAACAACC 
TTGGTAGACA AATTGTTGGC GCAGTCAGGA ACCCTTGCAT CTCGTGGAGA AGCTACTGAG
CGGGTTATGG ATTCTAACGA TCTTGAAAAA GAACGTGGTA TCACCATTCT GGCAAAAAAC
ACTGCTATTA AGTGGAATGA CTACCGCATC AACATCGTTG ACACCCCAGG TCACGCCGAC
TTCGGTGGTG AGGTAGAACG TGTTCTATCT ATGGTTGACT CAGTATTGCT ACTGGTTGAC
GCAGTTGATG GCCCAATGCC ACAAACTCGC TTCGTAACTA AGAAAGCCTT TGCTCAAGGC
CTTAAACCAA TCGTTGTTAT CAACAAGATT GACCGCCCAG GTGCGCGTCC TGATTGGGTT
ATTGACCAAG TATTCGACCT ATTCGACAAC TTAGGTGCAA CTGACGAGCA GTTAGATTTC
CCAATTGTAT ATGCATCAGC ATTAAATGGT TTCGCGACGT TAGATCCAGA TGTCGTTAGC
GAAGACATGA CTCCACTTTT CCAAACCATC GTTGAGAAAG TCTCTTTCCC TGACGCTGAC
GCGGAAGGTG CATTCCAGAT GCAAATTTCT CAAATCGACT ACAACTCATA CGTGGGTGTT
ATCGGTATCG GTCGCATCAA CCGTGGTAGC GTTAAGACCA ACCAGCAAGT CACTATTATT
GGCGCTGATG GCAAAACCCG TAACGGTAAA ATGGGCCAAG TATTAGGTTA CATGGGTCTT
GACCGTCACG AAGTAGACAT TGCAAACGCT GGTGACATCG TTGCGATTAC AGGCCTAGGC
GAGCTTAAGA TTTCTGACAC CATCTGTGCC GTTGGTGCCG TTGAAGCTAT GCCGCCGTTA
ACTGTTGATG AACCAACACT GACAATGACG TTCCAAGTAA ACACTTCTCC GTTCGCGGGT
AAAGAAGGTA AGTATGTGAC TTCACGTAAC ATTCTTGAGC GTTTACAAAC TGAATTAGTT
CACAACGTAG CACTACGTGT TGAAGAAACT GAATCTCCAG ATCGTTTCCG TGTATCAGGC
CGTGGTGAAT TACACCTTTC AATCTTGATT GAAAACATGC GTCGTGAAGG TTACGAGTTA
GCCGTATCGC GCCCAGAAGT AATTCTTAAG ACTATCGACG GTGAACTTTG TGAGCCATTC
GAAACGTTAA CTGTTGACGT TGAAGAAGAA GATCAAGGAT CTGTTATCGA GAAATTGGGT
ATCCGTAAAG CTGAAATGAA AGACATGCAG CTTGATGGTA AAGGTCGTGT ACGTATCGAC
TTCATCATCC CAAGCCGTGG TTTAATCGGT TTCCAAACTG AATTCTTAAC TGCTACTTCT
GGTACTGGTT TGATTTACCA CTCGTTTGAT CACTATGCAC CGCACAAAGG TGGTGACATT
GGTCAACGCG CTAACGGCGT ATTGATTTCA AACGCTACCG GTAAAGCATT AACCTTCGCA
TTATTTGGTC TACAAGACCG TGGTCGCCTC TTTATTGGCC ACGCTGCTGA AGTATATGAA
GGCCAAGTTG TTGGTATTCA CGCTCGCTCT AACGATCTAA CAGTTAACTG TTTGAAAGGT
AAGCAGCTAA CCAACATGCG TGCTTCTGGT ACTGACGAAG CGCAAGTACT GACTCCGCCA
ATCAACATGT CACTTGAGCA AGCGCTTGAG TTCATCGATG ATGACGAATT AGTCGAAGTC
ACGCCTAAGA ACATCCGTGT TCGTAAGAGA TTCTTAACTG AAAACGAACG TAAGCGTCAT
AACCGTAGCT AA
 
Protein sequence
MLENLRNIAI IAHVDHGKTT LVDKLLAQSG TLASRGEATE RVMDSNDLEK ERGITILAKN 
TAIKWNDYRI NIVDTPGHAD FGGEVERVLS MVDSVLLLVD AVDGPMPQTR FVTKKAFAQG
LKPIVVINKI DRPGARPDWV IDQVFDLFDN LGATDEQLDF PIVYASALNG FATLDPDVVS
EDMTPLFQTI VEKVSFPDAD AEGAFQMQIS QIDYNSYVGV IGIGRINRGS VKTNQQVTII
GADGKTRNGK MGQVLGYMGL DRHEVDIANA GDIVAITGLG ELKISDTICA VGAVEAMPPL
TVDEPTLTMT FQVNTSPFAG KEGKYVTSRN ILERLQTELV HNVALRVEET ESPDRFRVSG
RGELHLSILI ENMRREGYEL AVSRPEVILK TIDGELCEPF ETLTVDVEEE DQGSVIEKLG
IRKAEMKDMQ LDGKGRVRID FIIPSRGLIG FQTEFLTATS GTGLIYHSFD HYAPHKGGDI
GQRANGVLIS NATGKALTFA LFGLQDRGRL FIGHAAEVYE GQVVGIHARS NDLTVNCLKG
KQLTNMRASG TDEAQVLTPP INMSLEQALE FIDDDELVEV TPKNIRVRKR FLTENERKRH
NRS