Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_3437 |
Symbol | |
ID | 4019985 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 4106540 |
End bp | 4108207 |
Gene Length | 1668 bp |
Protein Length | 555 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637957489 |
Product | AMP-dependent synthetase and ligase |
Protein accession | YP_564435 |
Protein GI | 91794784 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1022] Long-chain acyl-CoA synthetases (AMP-forming) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.915272 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAACTGT CGATGGAAAA CTTCATTAAG ACCCCGATAC AAATGTTGTC CCATTGGGTC GAGACCCAAG GCGACCAAGT CTATTTACGC CAGCCTATAG AAGGTAAGTT TAAAAATTTA ACCTGGCGTG AGGTTCAGCA ACAAGTGCAT AAAATTGCTG GAGCCTTACG TCATCTTGGA CTGGCGCCTG GTGACAAGGT GGCTCTCCTG TCTAAAAACT GCGCCGAGTG GTTTATTGCC GATCTGGCCT TAATGCAAGG GGGATATATT AGTGTGCCCA TTTACCCGAC GGCCAATACT GAAACCATAC GCTATGTGCT TGAACACAGT GGCGCTAAGG CTATTTTTGT CGGCAAGCTA GACCACTGGA GCGAGCAAGA AGAAGCCATT GGTGGCGACT TGCTTCGCTT AGCCATGCCC TATGAAACCA TGCCATCTCA ATATCAATGG GATCAACTGC TGAATTTAGG CTCCCCCTTA GTAGAAGCGC CTACCACTAA GCCAGATGAT GTCATGACGC TTATCTATAC CTCGGGCTCC ACCGGCAAAC CCAAGGGTGT CATTCAAACA TTTGCCAGCT ATGGCTGGAC CTGTGAAGCC GTGGTCAGAG ATTTACGCAC TAACACTCAA GACAGCTTAC TCTCATACCT ACCCTTAGCG CATATCACCG AACGTGTGGC GGTTGAAGGC TCATCATTTC TTTCAGGTTC GACCGTGTCT TTCGTTGAAA GTTTAGATAC CTTTGTGGCA GATGTGAAAC GAGCCAAGCC TACGGTATTC TTCTCTGTTC CACGATTGTG GACCTTGTTC CATCTGAATA TCATCAATAA GATTGGCGCT AGCAGACTTA AATTACTGCT GAGGATCCCT ATCGTCAGCA GCATAGTGAA ACACAAGATC CAAAAGGAAT TAGGCTTAGA ACACTGCCGT CTTTTGGGCT CGGGTTCTGC ACCAATTCCG GCATCTCTCA TCCAGTGGTA TCACAATCTA GGCATGGATA TCTGTGAAGC TTGGGGCATG ACGGAAAACT GCGCTTACTC CATCATCAAC TACCCTTTCG ATGCCAATAA AATTGGCTCT GTGGGCCGCC CTGTTGAAGG CTGTCTAGTG CGCCGGGGCA ATGATGGTGA GTTGCTATTA AAAACCCCAG GACTGATGAC AGGCTATTAC CTGCAAGAGG AAGCCACCAA AGCCGCATTC GATGATGATA GCTACTTCCG CACCGGTGAT ATTTGTGAAA TCGATGCCGA TGGCTGCATC AGCATCACGG GACGCGTCAA AGATAACTTC AAAACCTCTA AAGGCAAGTA TGTCGCCCCA GTGCCCATCG AACGTAAATT AGCGCAAGAC TCACACATAG AACTTATTTG TGTGATTGGC TCGGGCTTAC CTCATCCTGT GGCCTTAGTG CAGCTCTCAG AAGGCGCATC ACTGCAGGCC CGTGAAGAAG TACGTACCTC GATTAAGGCC ACCTTAGATG CTGTGAATCC ACACCTTGAA TCCCATGAAC ACGTCGATGC CGTGGTGGTG GTGAAAGAGC CTTGGACCAT AGAAAATGAT GTACTGACAC CCACACTTAA GATTAAGCGT CACGTGCTAG AGAAAGCCTT TAGCGAGAAG GTAGACGGGG TTAGAGGCGC CCAAGTTCGT TGGGAAGATG AATTATAA
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Protein sequence | MELSMENFIK TPIQMLSHWV ETQGDQVYLR QPIEGKFKNL TWREVQQQVH KIAGALRHLG LAPGDKVALL SKNCAEWFIA DLALMQGGYI SVPIYPTANT ETIRYVLEHS GAKAIFVGKL DHWSEQEEAI GGDLLRLAMP YETMPSQYQW DQLLNLGSPL VEAPTTKPDD VMTLIYTSGS TGKPKGVIQT FASYGWTCEA VVRDLRTNTQ DSLLSYLPLA HITERVAVEG SSFLSGSTVS FVESLDTFVA DVKRAKPTVF FSVPRLWTLF HLNIINKIGA SRLKLLLRIP IVSSIVKHKI QKELGLEHCR LLGSGSAPIP ASLIQWYHNL GMDICEAWGM TENCAYSIIN YPFDANKIGS VGRPVEGCLV RRGNDGELLL KTPGLMTGYY LQEEATKAAF DDDSYFRTGD ICEIDADGCI SITGRVKDNF KTSKGKYVAP VPIERKLAQD SHIELICVIG SGLPHPVALV QLSEGASLQA REEVRTSIKA TLDAVNPHLE SHEHVDAVVV VKEPWTIEND VLTPTLKIKR HVLEKAFSEK VDGVRGAQVR WEDEL
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