| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3424 |
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| Symbol | |
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| ID | 4019972 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 4086333 |
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| End bp | 4090841 |
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| Gene Length | 4509 bp |
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| Protein Length | 1502 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637957476 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_564422 |
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| Protein GI | 91794771 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAATTTAC GAGTTACCTT TACTGCCACT CATCCGCTCA TTTTGGCCCT TGTATTGATA
CAAGGGCTGG TAATTTTCTT ACTGTCTTTT CCAGTGTTGG CCCAATCTGA CACTGAGCTC
AATTATGAAG TTAAGTTTGA ACATTTTACC GACAAATATG ATTTAAATCA GCACTCTGTT
ACCCGCTTAT TTAGGGATAA GGCTGGCATG TTATGGGTTG GTACTCAAGA TGGCCTGCAC
AGCTATAACG GCATAGAGTT TGAGCTATTT ATCAAACAAA ACAATAAATC CAATAGCATT
TCAGGTAACT TTATTACCGA CATTATTCAA GAACCTAACG GCGGATTATG GGTCGCGACC
TTAAATAATG GCTTGAATCG GCTCGACCTT AACAGTAGAA AATTCACCCG TTTTGACAAG
AGCCACGGCC TTAATGATCT CAGGGTAACG AACCTGAGTA TTATAGGTGA AACCCTCTGG
ATTGGCACCC GCACTGGGCT GTTTTTACTC TCACTAAACA CTCACGACAT CACTCGAGTG
ACCTTAGGGC AAAATAGTGC GCCTCATATC ACTAGCTTGA CCAATATAGA TGATAAATAC
GTTATTGTTG GCACTGAAAA ACGTGGCACC TTTGCCATTG ATAACAACAG CATCATCAGA
TTAGATTTAC CATCAGAGCA AACCTTATAC CGAGCGCATG CCAGCTCCAT CTATTCGGTG
TGGATGGCTA TAGACAATCA AATATGGCGT TATAACTTAG CCACCCAAGA AAAAGAATTT
ATCTGGGAAA GAAAAGACCA ACAAGGCAAA GCCGCGCATA TCACAGACTT TGTTGTTAGC
CCGGCAGAAC AAATTTGGGC TATTGGTCCC AACTCTGGCC TAATCGAACT CAATATACAG
CAATCACACT GGCAGAGCCG AGTGCATAAG CACCAGCCCC GTAAACTGCA TAGCCTAACA
GAAAACACGA TACAGTCATT ATTGCTTGAT GATGACGGCA CCCTTTGGTT GGGTACTGGC
TATTCAGGCA TAGATAAACT CAATATCAAT CAGCATTATT TTAACCACCT CTATGATTAT
CATTCCAGCC AGCCGAGGGT CGCGAATATG ATCCGTGCCC TATTCAGGGA CGCTGAGGGT
ACTTTCTGGA TTGGGACTGA AGGGGCTGGG GTTAAATCCA TCAAGCAAGG TCAACAACGC
TATCACAATC AGTTGTTTGC CGATGCGTTA GGCCTCAAGA TTGAGCACTT GAATCTAACA
GTTTATGAAA TAATACAAGA TAAGCAAGGC CAACTTTGGT TTGCTACTAA CTACGGCTTG
GCTAAATTGC ACCTGGGAAA ACTCAGCTTC ATTCCTTTAG ATCAAACGCT CGCCGACCAA
CAGATTAAAT TACAGAGTAT CACCTTAGAT AATAAAGGTA CCTTGTGGGC TGTCAGCGCC
GAAAACCTGT TCTCACTACA AGACGGTAAG CTCAAAATAC ATGAGTTAGC ACCTCAAGGT
AACATAAACT TTGAAGAGAG CAATTTTAGA AAAGTCTTCT ACCATAACGA CATTTTATGG
TTAGGCAGTT TGACAGGACT AATTAGACTT AATCTCAAAA ATCATCAAAT TACTCATTAC
CAAGCCCAAC CGAATAAAGC CAATAGTCTT AGCGATAATA AGGTGCGTGA TTTTCTAGTC
ACTCGTGACG GCGACCTTTG GATCTCTACC CATGGCGGTG CCAATAAGGT GATCTTGGAT
CTTAATGGCG ATATTTCCTT TGAATCGATA AAAGCCAACT CAGATCTAGT CAACCGTACC
ACCTATGCCA TGTTAGAAGA TGAACAAGCT AACTTATGGT TAAGCACGAA CTCAGGTATT
GCCCGCTACA ATCCAAGTAA ACAGGTATTA ACTGCCTTCA ATGAATATGA GGGGCTGCAA
TCATCAGAAT TCAATGGCGC AGTCAAATGG AAAGACACAG ATGGCACCTT ATGGTTTGGT
GGTATTAACG GCATCAACTT GTTCAATCCA AGTCAAATTC CAGCCCAAAG GCCGGCAATA
AAACTCGCAT TAACTGGCTA TGTGCTAGGC GATAAACACT ATCGACTACT GGATCTAAAC
CAGCCACCAA CAATTCAACT GCCATTTGAC AAACAACTAG TTAGCTTCGA AGTATCGGCG
CTTAATTTCA ATTACCCTGA GCTAAATCGA TTCAGTTACT TCCTTGTTGG AGTCGATAAC
CAGTGGCGTG AGCGTAGCAG TAAGAACGAG ATAACCTACA CCAATTTAGC ACCGGGTAAA
TACGAACTAT TAGTACGCCA CGCCCTAGAG CATAATGACT ACAGCCAAAG TAGACTAAGT
GTTTCTGTAG AGGTGATTCC GCCGATTTAT CGCACCACTC TAGCCTATAT TATCTATATT
TTACTGGGGT GTATTTTCAT CTTACAAGCA ATACATTCTC GTCAAAAAAA GCAACAAAAA
CAAAACGAAT TTGAGACCAG CATTAAGGCT TCTGAAGAGC GACTCAAATT AGCCTTATGG
GCCTCAGGCG ATGGCATGTG GGATTGGAAT ATTCCAGACA ATCAAGTGTT TCGCACCAAT
ATGAGTAACC CTCAAAGTCT TAGCCGCAGC AAAAGCACGC TAATCAACAG CATCCATCCC
GAAGATAGAC CTAAAGTGCA ACTGCTACTT AATGAGCACA TTGCAGGTAA TAGTGAGTTC
TACGAGGCCG AATACCGTAT TCGAGATGAA GTGGGCAGTT GGATCTGGTT ACTGGACAGG
GGTAAAGTGG TCGAGAAAGA TACCAATGGC GCCCCTATAC GCATGGCGGG CACTCATAAA
GACATCACCA GCCGTAAAGT CATTGAAAAT GAGCTAAAAC TGTCCTCTCA GGTGCTTTAC
AGCATGAATG AAGCTGTGGT GGTGGGTGAA CTGGATTATC GTGTCCGCTC AGTCAACCCT
GCATTTACTC GCATCACAGG ATTTGAGCCT GATGAAGTCA CAAATAAGCA CTTTTTATTC
TTAGCAATTT CCTCCCAAGG ACGAGATTTC TATAATCAAG TGGAAACCCA GCTATTAAAG
CATAAGCATT GGGCGGGTGA ATTGAAAATT CGCACTCGTG ACAAGAAAGG CATTCTCGCC
TGGCTTGAAA TCAACCAAGT GATAGACAAT AAAGGTGAGA CGAGCCATTT CGTGGCGGTA
TTTACCGATA TTACCGCCCG TAAGAAAGCC GAAGAAGACC TACGTATCTT AGCAAATTTC
GATCCACTCA CTCATCTGCC TAACCGTACC TTGTTCCAAG ACAGGCTAGA TCAAGCCATT
ACTAAGGCTC ACAGAAACCA AAATATTGTC GCCCTCTTCT TCCTCGACTT GGATAGATTT
AAACATATCA ACGATTCCAT GGGTCACCAT ATCGGCGACT TATTGCTTAA AGCCGTCGCC
CATAGGTTGC AGAGAGCTGT TCGCGAGGGT GATACCGTGG CTCGCCTTGG TGGTGATGAA
TTTACCATTA TTCTAGAAGG GGTAACTAAG CTGAATGCCG TCACTTTAGT GGCTGAGAAA
ATCCTTAATG CTTTCCAGAA GCCGTTTTTA CTCGATGATA AAAACCTGAC AATCTCGCCT
TCCATAGGGA TAAGCTTGTA TCCCGATGAT GCCAATGACG TCAGTTCGCT AATTAAGTAT
GCCGATACCG CCATGTATCA CGCTAAATCC GTTGGCCGTA ACAATTTCCA GTTCTATACC
GATCAATTAA ATCAATATGC GACTCGTCAT GTGCAGCTGG AAGCCGGTTT AAAACTTGCC
ATTCAAGAAA ACGAATTATC TTTGGTGTAT CAGCCTAAGT ACGATATTTT CACCAAGAAG
ATTGTTGGCT TTGAAGCTCT ACTAAGATGG AACAACCCAA GTTTAGGCTT TATTTCACCC
GCTGAATTTA TCCCCCTAGC GGAAGAAACT GGCTTTATTA ACCAGATTGG CCATTGGGCC
ATTAATCAAG CCTGTAACCA ACTGGCTCAA TGGCATGAAC TAGGCTTTAG AGACGTTTCC
ATCGCGGTGA ATTTATCCGC TCGGCAACTT AAAGCAGACA TCATTTCGAC CATAGAAGTG
GCGCTGGCAG TCTCTGGTCT GCCAGCCAGT GCCTTAGAGC TCGAGCTCAC AGAATCTATG
ATCATGGGCA ACCCACAAGA TTCTGTCGCT ATTTTGTCCC AGCTTAAGAG CTTAGGCTTA
ACCATAGCCA TAGATGACTT CGGCACTGGC TATTCGAGCT TAAGCTATTT GAAACGCTTC
CCCATAGACA CCTTAAAAAT TGACCGTGAG TTTGTTCGTG ATATCACAGA AGATCCCGAC
GATGCCGCTA TCACCAGTGC CATCATAGCC TTGGCCCATA GCCTAGATCT CAACGTGATC
GCTGAAGGGG TTGAAACTCC GGAACAGCTG GACTTTTTAT TGAATGAAGG CTGCGATCAA
GTACAAGGCT TCTTACTCAG TAAGCCTTTG TCAGCGAAAG ATGCACTCGC CTTATTGAAA
AAAAGCTAA
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| Protein sequence | MNLRVTFTAT HPLILALVLI QGLVIFLLSF PVLAQSDTEL NYEVKFEHFT DKYDLNQHSV
TRLFRDKAGM LWVGTQDGLH SYNGIEFELF IKQNNKSNSI SGNFITDIIQ EPNGGLWVAT
LNNGLNRLDL NSRKFTRFDK SHGLNDLRVT NLSIIGETLW IGTRTGLFLL SLNTHDITRV
TLGQNSAPHI TSLTNIDDKY VIVGTEKRGT FAIDNNSIIR LDLPSEQTLY RAHASSIYSV
WMAIDNQIWR YNLATQEKEF IWERKDQQGK AAHITDFVVS PAEQIWAIGP NSGLIELNIQ
QSHWQSRVHK HQPRKLHSLT ENTIQSLLLD DDGTLWLGTG YSGIDKLNIN QHYFNHLYDY
HSSQPRVANM IRALFRDAEG TFWIGTEGAG VKSIKQGQQR YHNQLFADAL GLKIEHLNLT
VYEIIQDKQG QLWFATNYGL AKLHLGKLSF IPLDQTLADQ QIKLQSITLD NKGTLWAVSA
ENLFSLQDGK LKIHELAPQG NINFEESNFR KVFYHNDILW LGSLTGLIRL NLKNHQITHY
QAQPNKANSL SDNKVRDFLV TRDGDLWIST HGGANKVILD LNGDISFESI KANSDLVNRT
TYAMLEDEQA NLWLSTNSGI ARYNPSKQVL TAFNEYEGLQ SSEFNGAVKW KDTDGTLWFG
GINGINLFNP SQIPAQRPAI KLALTGYVLG DKHYRLLDLN QPPTIQLPFD KQLVSFEVSA
LNFNYPELNR FSYFLVGVDN QWRERSSKNE ITYTNLAPGK YELLVRHALE HNDYSQSRLS
VSVEVIPPIY RTTLAYIIYI LLGCIFILQA IHSRQKKQQK QNEFETSIKA SEERLKLALW
ASGDGMWDWN IPDNQVFRTN MSNPQSLSRS KSTLINSIHP EDRPKVQLLL NEHIAGNSEF
YEAEYRIRDE VGSWIWLLDR GKVVEKDTNG APIRMAGTHK DITSRKVIEN ELKLSSQVLY
SMNEAVVVGE LDYRVRSVNP AFTRITGFEP DEVTNKHFLF LAISSQGRDF YNQVETQLLK
HKHWAGELKI RTRDKKGILA WLEINQVIDN KGETSHFVAV FTDITARKKA EEDLRILANF
DPLTHLPNRT LFQDRLDQAI TKAHRNQNIV ALFFLDLDRF KHINDSMGHH IGDLLLKAVA
HRLQRAVREG DTVARLGGDE FTIILEGVTK LNAVTLVAEK ILNAFQKPFL LDDKNLTISP
SIGISLYPDD ANDVSSLIKY ADTAMYHAKS VGRNNFQFYT DQLNQYATRH VQLEAGLKLA
IQENELSLVY QPKYDIFTKK IVGFEALLRW NNPSLGFISP AEFIPLAEET GFINQIGHWA
INQACNQLAQ WHELGFRDVS IAVNLSARQL KADIISTIEV ALAVSGLPAS ALELELTESM
IMGNPQDSVA ILSQLKSLGL TIAIDDFGTG YSSLSYLKRF PIDTLKIDRE FVRDITEDPD
DAAITSAIIA LAHSLDLNVI AEGVETPEQL DFLLNEGCDQ VQGFLLSKPL SAKDALALLK
KS
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