| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3411 |
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| Symbol | |
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| ID | 4019959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 4069289 |
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| End bp | 4070842 |
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| Gene Length | 1554 bp |
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| Protein Length | 517 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637957463 |
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| Product | threonine dehydratase |
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| Protein accession | YP_564409 |
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| Protein GI | 91794758 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1171] Threonine dehydratase |
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| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form
[TIGR01127] threonine dehydratase, medium form |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGGCAT TAGCATCAGA AACCCAGCGG GATTTAGCCC AGTATTATTT ACAGAAAATC
TTGCTGTCAT CCGTGTACGA CATCGCTAAA GTAACACCGC TCACTAGCCT TAATAAGCTG
TCGGCGCGCT TGGGCTGTCA GGTGTTTTTA AAGCGCGAAG ACATGCAGCC GGTGCATTCT
TTTAAGCTGC GCGGTGCTTA CAATCGCATT GCTGAGCTGA CTTCGGATGA ATGTCAGCGG
GGTGTGGTGT GCGCTTCTGC GGGTAATCAT GCCCAAGGGG TGGCGATGTC GGCGGCAAGT
CGCGGCATAG ATGCGATTAT CGTTATGCCA AGTACCACCC CAGATATCAA AATCGATGCC
GTGAAACGCC TCGGCGGTAA TGTGCACCTT TATGGCCAAG GTTTTGATCA GGCGAATGAA
TATGCCATGG GGTTGGCTAA GACTCAGGGG CGAGTTTATA TCGCGCCCTT CGATGATGAA
GCTGTGATCG CAGGCCAAGG TACTATCGCC CAAGAGATGC TACAGCAGCA GCGAGACATT
GAAAGGGTCT ACGTTCCTGT AGGCGGTGGC GGTTTAATCG CTGGCATCGC CGCTTATTAC
AAGGCCGTGA TGCCGCAGGT GAAAATTATC GGCGTAGAGC CAGAAGATGC CGCCTGCTTA
AAGGCGGCAC TGTTAGCGGG TGAGCCTGTG ACTCTATCCC AGGTGGGGTT ATTTGCCGAT
GGCGTGGCGG TCAAGCGCAT TGGCGCTGAG CCTTTTCGAC TCGCCAAAGA ATACGTCGAT
GAAGTGGTAA CCGTAAGCTC AGATGAAATC TGCGCCGCCA TCAAGGATAT TTTTGAAGAC
ACCCGCGCTA TTGCTGAGCC CGCCGGGGCG CTAGCATTGG CAGGGCTTAA GAAACACCTT
GGAAAAACAG GCAAGGGCGA GAAAGTGGCG GCTATTTTAA GTGGCGCTAA TGTGAATTTT
CATAGCCTGC GTTATGTGTC TGAGCGCTGC GAACTAGGCG AGCAAAAAGA GGCGATTCTT
GCGGTCAAGG TCCCAGAAAA ATCCGGCAGT TTTCTGCGAT TTTGCGAGCT GTTAAATAAG
CGGGTGATGA CAGAGTTTAA CTACCGCTTT AGTGGTCGCG ACCAAGCCGT GGTGTTTGCG
GGTATTCGCT TAAGCAATGG CGCCGAGGAG CTGGCAGAGA TTATCGCGAC CCTTGAGTCT
CAAGGGTTTG AAGTGCAAGA TTTATCACAA GATGAAACCG CAAAACTGCA TGTGCGCTAC
ATGGTGGGCG GCAGACCGCC AGAGCCTCTG CAAGAGCGGT TATTTAGCTT CGAGTTTCCA
GAGCACCCCG GCGCCTTACT TAAGTTTTTA ACCACATTGC AAAGCCAGTG GAACATCAGT
TTGTTTCATT ATCGCAACCA CGGCGCCGCA TTTGGACGAG TATTAGCAGG TTTTGAAGTA
CCAGCCAGCG ATGCCTTACC CTTTGCGCGC TTTTTAACTG AACTTGGCTT TGTCTATCAA
GAAGAAACCC ACAGCCCAGC GTACCAGCTG TTTTTGAATA CGCCTGCAGT GTAG
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| Protein sequence | MLALASETQR DLAQYYLQKI LLSSVYDIAK VTPLTSLNKL SARLGCQVFL KREDMQPVHS
FKLRGAYNRI AELTSDECQR GVVCASAGNH AQGVAMSAAS RGIDAIIVMP STTPDIKIDA
VKRLGGNVHL YGQGFDQANE YAMGLAKTQG RVYIAPFDDE AVIAGQGTIA QEMLQQQRDI
ERVYVPVGGG GLIAGIAAYY KAVMPQVKII GVEPEDAACL KAALLAGEPV TLSQVGLFAD
GVAVKRIGAE PFRLAKEYVD EVVTVSSDEI CAAIKDIFED TRAIAEPAGA LALAGLKKHL
GKTGKGEKVA AILSGANVNF HSLRYVSERC ELGEQKEAIL AVKVPEKSGS FLRFCELLNK
RVMTEFNYRF SGRDQAVVFA GIRLSNGAEE LAEIIATLES QGFEVQDLSQ DETAKLHVRY
MVGGRPPEPL QERLFSFEFP EHPGALLKFL TTLQSQWNIS LFHYRNHGAA FGRVLAGFEV
PASDALPFAR FLTELGFVYQ EETHSPAYQL FLNTPAV
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