| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3391 |
|---|
| Symbol | |
|---|
| ID | 4019939 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 4046921 |
|---|
| End bp | 4047838 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637957444 |
|---|
| Product | prepilin peptidase |
|---|
| Protein accession | YP_564390 |
|---|
| Protein GI | 91794739 |
|---|
| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1989] Type II secretory pathway, prepilin signal peptidase PulO and related peptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAT TTATCGCCCT TATGGGCCAA TATCCTGTTA TTTTTATCAG TGTTTGCTTT
ATTTTTGCCG CCACCATAGG CAGCTTTCTT AACGTGGTTA TCCACCGTCT ACCTGTAATG
ATGAAGCGTG AGTGGCAAGC TGAATGTAAT CAATACTTAC AAGAGTATCA CCCGGATATA
GTCAAAGACG TCAGCCTGAA ACGCTTAGAA AAACCGTTAG ATAGTTTCCC CGAACGTTAT
AACTTGGTAG TGCCTAATTC CTGCTGCCCT AAATGCAATG CCGCCATTAA GCCTTGGCAT
AACTTACCTA TCCTTGGCTG GTGCATGCTA AAAGGAAAGT GTGCTCAGTG CCAACAGGCT
ATTTCTGTAC GCTATCCCGT TATCGAACTA CTCACAGGGC TTATGGTTGC TGTCTTAGCT
TGGCACTTTG GCCCTACAAG TCAGTTTTTG TTTGCCTCCC TACTGACCTT TGTCTTGATA
GCATTGACTG GCATAGATCT CGATGAAATG CTATTGCCAG ACCAGCTTAC TATGCCGCTG
CTTTGGCTAG GCTTGTTGAT TAATTTACAA GGCGTATTCA CAAGTCCGAC TGATGCCATC
ATAGGGGCAA TTGCTGGTTA TATGAGCCTA TGGTCGGTGT TTTGGCTATT TAAACTCGTT
ACGGGTAAGG AAGGCATGGG TTACGGTGAC TTTAAACTTC TGGCGGTGTT TGGCGCCTGG
CTTGGTTGGC AAATGCTGCC ATTGATAATT TTACTGTCTT CATTAGTGGG TGCAGTTGTC
GGGATTGCGC TGATTTTAAG TAAAAAACTC AATCAAGGAA ATCCGATCCC ATTTGGTCCT
TACATCGCCA TGGCTGGTTG GATAGCGCTT ATTTGGGGCA ATGACATAGT TAATTGGTAT
CTAGGCACCT TCTTGTGA
|
|---|
| Protein sequence | MSEFIALMGQ YPVIFISVCF IFAATIGSFL NVVIHRLPVM MKREWQAECN QYLQEYHPDI
VKDVSLKRLE KPLDSFPERY NLVVPNSCCP KCNAAIKPWH NLPILGWCML KGKCAQCQQA
ISVRYPVIEL LTGLMVAVLA WHFGPTSQFL FASLLTFVLI ALTGIDLDEM LLPDQLTMPL
LWLGLLINLQ GVFTSPTDAI IGAIAGYMSL WSVFWLFKLV TGKEGMGYGD FKLLAVFGAW
LGWQMLPLII LLSSLVGAVV GIALILSKKL NQGNPIPFGP YIAMAGWIAL IWGNDIVNWY
LGTFL
|
|---|
| |