| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3390 |
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| Symbol | |
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| ID | 4019938 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 4045495 |
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| End bp | 4046763 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637957443 |
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| Product | type II secretion system protein |
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| Protein accession | YP_564389 |
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| Protein GI | 91794738 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAACTG CCAGCGCAAG TAAAAGGCCT GCAAAAAAGA AAAATGATGT TAAGCATCAG
CCTAAGGTGT TTACCTTTCA GTGGAAAGGT GTAAATAGAG ATGGTCAGAA AACCGCAGGT
GAGCTACGTG GCACCAGTAT CAGTGAAATC AAGGGCATAC TCAAATCACA AGGGGTAACC
CCCAAAGGGG TCAATAAAAA ATCGGCCCCG TTATTTAAGC TGTTCGAGCC ACAGATTAAT
GCCATGGATA CCACCATGCT CACTCGCCAA ATTGCAACTA TGTTGGCCGC TGGCGTGCCC
TTAGTCACCA CTTTAGAACT ATTAGGCCGT GGCCATGAAA AACCTAAAAT GCGTGAACTC
CTCGCCATTA TCATCGCCGA TGTGCAATCG GGTATTCCTC TTTCTAATGC ACTAAGACCC
CACAGGCGCT ATTTTGACGA CCTCTATGTG GATTTAGTCG CAGCAGGCGA GCATTCTGGC
GCCTTAGATC TGGTGTTCGA TCGCATCGCC ATCTATAAAG AAAAAGCCGA GGCGCTCAAG
TCAAAAATCA AGAAAGCCAT GTTCTACCCC GCCGCCGTAG TTGTGGTTGC GGTGGCGGTC
ACTGTGTTAC TCCTGCTATT CGTGGTGCCA CAATTTGAAG ATATTTTCGC CGGATTTGGC
GCAGAACTGC CCGCATTTAC CCAACTAGTA CTGGGTATTT CACGTGCCTT GCAAGCCTCA
TGGCATGTTA TTTTTGCTGC CATAGGGTTA GCGATTTTCT TGTTCGTGAG AGCACACAGA
AGCTCGCAAA TGGTGCGGGA CAGAGTCGAT GAAATAGTGC TTAAAATCCC CGCCATTGGC
GATATTTTAC ATAAAGGCGC CATGGCGCGC TTTGCCCGTA CCTTAGCCAC CACCTTTGCG
GCAGGTGTGC CATTAATCGA TGGCTTAGAA TCTGCCGCTG GCGCCTCCGG TAATGCCGTG
TATCGCAAGG CATTACTTAA AGTCAAGCAA GAAGTGACTT CAGGCATGCA GATGAATGTC
GCCATGCGTA CTACTAACCT TTTCCCTGAT ATGCTCATTC AAATGGTGAT GATAGGCGAA
GAATCTGGTT CACTGGATAA TATGCTCAAC AAGGTGTCGA ACATCTATGA AATGCAGGTG
GATGATGCGG TGGATGGACT ATCTAGTTTA ATCGAACCTG TGATGATGGT GGTGATAGGC
ACTCTAGTTG GTGGCCTTAT CGTTGCCATG TACCTACCTA TCTTCCAAAT GGGTAAAATT
GTCAGCTAA
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| Protein sequence | MATASASKRP AKKKNDVKHQ PKVFTFQWKG VNRDGQKTAG ELRGTSISEI KGILKSQGVT
PKGVNKKSAP LFKLFEPQIN AMDTTMLTRQ IATMLAAGVP LVTTLELLGR GHEKPKMREL
LAIIIADVQS GIPLSNALRP HRRYFDDLYV DLVAAGEHSG ALDLVFDRIA IYKEKAEALK
SKIKKAMFYP AAVVVVAVAV TVLLLLFVVP QFEDIFAGFG AELPAFTQLV LGISRALQAS
WHVIFAAIGL AIFLFVRAHR SSQMVRDRVD EIVLKIPAIG DILHKGAMAR FARTLATTFA
AGVPLIDGLE SAAGASGNAV YRKALLKVKQ EVTSGMQMNV AMRTTNLFPD MLIQMVMIGE
ESGSLDNMLN KVSNIYEMQV DDAVDGLSSL IEPVMMVVIG TLVGGLIVAM YLPIFQMGKI
VS
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