| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3389 |
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| Symbol | |
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| ID | 4019937 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 4043609 |
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| End bp | 4045318 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637957442 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_564388 |
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| Protein GI | 91794737 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCTCAA CTGCGCTTCA TCTAGGCCTC TCCAATTTGT TTATTCGCAA GGGTCTCCTT
AGCGAAGACA TCATGGCCTC CGCCATCGCC GATTCACGTA AAAATAAACA CTCGCTAGTA
GCAACCCTGA TTAACGGCAA GCACTTATCC GCTCGTGAAA TTGCCGAGCT GTGCCATGAA
GAATATGCCA CCCCGCTATT AGACTTAGCA GAATTCGATG TTGCCGCCAT CGCGGAAGAC
TTATTAAATA AAAAACTTAT CGCCAAACAT CAGTGCTTAC CGCTATTTAA GCGCGGTAAT
CGCCTCTATA TTGCTACCTC TGACCCCACC AATATTACCG CATTGGAAGA TTTTCAATTT
AGCTTAGGCC TGCACGCCGA AGCCATTTTG GTGGAAGACG ATAAGCTCAG CAAGGCCCTA
GAGAAGGTCA TCGAAGATGA TATTACTGGG TTAGATCTAA ACGGCATGGA TGAAGCCGCC
CTCGCTGGCA TTGAAATCAC CGACACAGAC AAGCGTCATG AAGAGCCAGG CGGTGAAAGC
AGTGACGATG CACCCATCGT TATTTACATT AATAAAATCC TCACCGATGC CATACGTAAA
GGCGCCTCAG ATTTGCATTT TGAGCCCTAT GAGAAGCGCT ATCGCATTCG TTTTCGCATC
GATGGCATAC TCCATGAAGT CTCAGAGCCG CCAGTGGCAC TTTCCGGGCG TATTTCGGCC
CGCTTAAAGG TGATGTCAAA ACTTGATATT GCCGAGCGCC GCGTGCCACA AGATGGCCGC
ATCAAGATGA AGCTATCCCG CACTAAATCT ATCGACTTTC GTGTTAGCAC CTTGCCCACC
ATCTGGGGTG AGAAAATCGT AATGCGTATT TTGGACTCTT CATCGGCGCA GTTAGGTATT
GAAAAACTTG GCTATGAAGA CGATCAACGC TTGCTCTATG AAGAAATGCT CGCCAAGCCT
CAGGGGATGA TTTTAGTCAC AGGCCCCACG GGCTCAGGTA AAACCGTGTC CTTGTACACA
GGTCTTAATA TTCTCAATAC CGAAGAGCGT AATATTTCCA CCGCAGAAGA CCCAGTTGAA
ATTAACCTCG AAGGGGTGAA TCAGGTCCAT ATCAATTTAA AAGCCGGCCT GACGTTTGCG
TCAGCCCTGC GCTCATTTTT GCGCCAAGAT CCGGATGTGG TCATGGTGGG TGAAATACGT
GACTTGGAAA CTGCAGAAAT CGCTATTAAG GCGGCGCAAA CCGGCCACTT AGTGCTATCG
ACACTGCATA CTAACTCGGC GGCGGAAACC CTAACCCGCC TCATTAACAT GGGTGTGCCT
GGTTATAACA TTGCAAGTTC GGTGAATTTA ATTATCGCTC AGCGTTTGGC AAGGCGCCTG
TGTCCCGAGT GCAAACATGC CGAAGATATT CCTGTGGCCG AGCTGCAGCG CTTAGGCTTT
CAACAAGCTG ATATCGACAA AGGTTTCACT GTGTTTAAGC CCGTTGGCTG TGAGTTTTGC
TCCGGTGGCT ATAAGGGCCG TTTAGGCGTA TATGAAGTGA TGAAGATGTC TGATGATATT
GCCCGCACCA TAATGGAAGG CGGTAACTCA TTGCAAATTG CCCGCATCGC CAAAGAGCAA
GGCATGCGGG ATTTACGCCA ATCGGGTCTG TTAAAAGTAA TCCAAGGCCT AAGTAGCATC
GCCGAGATCA ATCGTATCAC CAGCTCTTAG
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| Protein sequence | MPSTALHLGL SNLFIRKGLL SEDIMASAIA DSRKNKHSLV ATLINGKHLS AREIAELCHE
EYATPLLDLA EFDVAAIAED LLNKKLIAKH QCLPLFKRGN RLYIATSDPT NITALEDFQF
SLGLHAEAIL VEDDKLSKAL EKVIEDDITG LDLNGMDEAA LAGIEITDTD KRHEEPGGES
SDDAPIVIYI NKILTDAIRK GASDLHFEPY EKRYRIRFRI DGILHEVSEP PVALSGRISA
RLKVMSKLDI AERRVPQDGR IKMKLSRTKS IDFRVSTLPT IWGEKIVMRI LDSSSAQLGI
EKLGYEDDQR LLYEEMLAKP QGMILVTGPT GSGKTVSLYT GLNILNTEER NISTAEDPVE
INLEGVNQVH INLKAGLTFA SALRSFLRQD PDVVMVGEIR DLETAEIAIK AAQTGHLVLS
TLHTNSAAET LTRLINMGVP GYNIASSVNL IIAQRLARRL CPECKHAEDI PVAELQRLGF
QQADIDKGFT VFKPVGCEFC SGGYKGRLGV YEVMKMSDDI ARTIMEGGNS LQIARIAKEQ
GMRDLRQSGL LKVIQGLSSI AEINRITSS
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