| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3376 |
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| Symbol | |
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| ID | 4019924 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 4019316 |
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| End bp | 4020758 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637957429 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_564375 |
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| Protein GI | 91794724 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAACCGGG ATGAACACCA AAACCTGGGT CGCTTTATCG ATCTGTTAAT CGATGCCATT
TGCGTCGTCG ATAAATCTGG CCGTTTTGAG TTTGTCAGTG CCAGTGCCGA ACAGATTTTT
GGCTATCGGC CCGACGAAAT GATCGGCATG AAGGTGCTTG ACCTGGTATT TCCTGCCGAC
CGAGAGCGCA CCTTAGCGGC GGCATTAAAT ATAATGCAAG GCCATGAAAA TACTCATTTC
GAAAATCGTT ACGTGCGTAA AGATGGCCAA ATAGTGGATA TTTTATGGTC GGCGCGCTGG
TCAGAAGATC ATCAGCAAAG AATCGCTATC GCCCGCGACA TCACCAGACG CAAAAATATC
GAGCGCCGCC AGGCCGCGCT TTATGCTATT TCAGAAGCCG CTCATCTGGC AGATGATTTA
CCCACCTTTT ATCAAGGCAT TCACCATATT ATTGAACAAC TGCTGCCAGC AGCTCACTTT
GCCATTGCAG CCTATGACGC TAATACCTGT GAATTAAGTT TTCTGTATGA CACAGACACA
GCTAAGACAG CGGACACAAG TGTCCCCTAC CTTGATGAGC CGACTAAAAA TTCCCTTAAA
AGCACCAGCC TTAAGCAACT CAATTCAATT AATTTGACTA CAGATCAAGG TGACTCAAAC
AATTCAGCAT TTTGTCGTCA GGTTATCCAT AAGGCTGCCC CCTTACTGGT CAATCTTGAT
TCCCTTTCAG AGCATTCAGT AAAAATTCGC AACATAGTAA AACGCAGTCA AGCCTGCTGG
CTCGGTGTTC CTTTAAAATT ACAGCAAGAC ATCATCGGTG TTTTGATGAT GCACAGCGGC
ATCAATACCA CGGCTTACAC TCAGCAAGAT GAAGAGCTGA TGGGGTTTGT TTCCACCCAA
ATTGCCTCTG CAATTGAACG GCAGCAGATG ATCACTAAGC TTAAGCACAT TGCACTCTAC
GATCAGCTAA CCCAATTACC CAACCGAGCC CTGTTTCATG ACCGCATACA AGTCGCATTA
GCGCACGCCC ACAGAGAAAA TACCCGCTTA TCGTTACTGT TTCTCGATTT AGATAAATTT
AAGTGGGTTA ATGATAACTG CGGTCATCAC ATCGGCGATG CCTTGCTGCA GATAACGGCT
CAACGTATTC TGCATTGCGT ACGAAAGACG GATACGGTAT CGCGTTTTGG AGGGGATGAA
TTTGTGATCT TACTCGATGA TGTTGGCAGT GAAAACAACA GCTTAAAAAT CGCCCAATCA
ATACTTACCG CCCTTAACCA AGCTTTTCAT ATCACGGATC AATTACTGCA TATTCTCCCC
AGTATAGGCA TAGCCCATTA TCCACAACAT GGGATAGATG AAAAACAGCT ATTAGCCAGC
TCTGATGCCG CCATGTATCA AGCCAAAAAG CGTGGCGGGA ATCGCATTCA AGAGTGTAGT
TAA
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| Protein sequence | MNRDEHQNLG RFIDLLIDAI CVVDKSGRFE FVSASAEQIF GYRPDEMIGM KVLDLVFPAD
RERTLAAALN IMQGHENTHF ENRYVRKDGQ IVDILWSARW SEDHQQRIAI ARDITRRKNI
ERRQAALYAI SEAAHLADDL PTFYQGIHHI IEQLLPAAHF AIAAYDANTC ELSFLYDTDT
AKTADTSVPY LDEPTKNSLK STSLKQLNSI NLTTDQGDSN NSAFCRQVIH KAAPLLVNLD
SLSEHSVKIR NIVKRSQACW LGVPLKLQQD IIGVLMMHSG INTTAYTQQD EELMGFVSTQ
IASAIERQQM ITKLKHIALY DQLTQLPNRA LFHDRIQVAL AHAHRENTRL SLLFLDLDKF
KWVNDNCGHH IGDALLQITA QRILHCVRKT DTVSRFGGDE FVILLDDVGS ENNSLKIAQS
ILTALNQAFH ITDQLLHILP SIGIAHYPQH GIDEKQLLAS SDAAMYQAKK RGGNRIQECS
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