Gene Sden_3352 details

Gene Information

• Locus tag: Sden_3352
• ID: 4019900
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: -
• Start bp: 3993595
• End bp: 3995568
• Gene Length: 1974 bp
• Protein Length: 657 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 637957405
• Product: regulatory protein CsrD
• Protein accession: YP_564351
• Protein GI: 91794700
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 33
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGCTCA CTAAAATTCT TACAAAAAAA CTGACTAGCT TTTGGCTACT GTCGCTGATG 
GCGGTTGCCT GTGTATTTTT ACTTTGCGCC GGCATCAGTT TTATTCAACT CACCTACAAG 
TTTCAGCAGC AACAGGTGAA AGATTTTAAT ACCTTAATGA CCCAACAAGT GCAGCACTTT 
AGCCACTTAG AAAACGCGGC CATTAACCAA GTACAGCGAG ATGACGAACA AGGGCGTTCT 
CAAGCACAGT TGGCCCATTG GTTACCGCAG CTCTTGGCTA ATTATCACAC TGTGGAGTTT 
CGCTTATTTG AGGGCGATAA GCTTAGGTAC AGTTACAATA ATGGTGCCAA TCTGCAACAG 
GGGGTACGCT ACAAACAGGC CTTAGACGGG CATTGGCGTA TGGAGCTTGT GCTGGTGGCG 
CCATTTTATT TACACGCGTT AAGTTGGCAA GAGTACTGGG TGTTATTGAT AGGTTTTGCC 
GCTATTTTTG CCCTCGTCTT CTACGGTCAG CGCTGGTTTG CCCAAGAGCT TGATGGGGTC 
GAGGAGCTTG CGATGCGCAG TCATCTCATC TTAGATGGTA AGCTTGAGCA AGCCTTAGCC 
AGTGCCGGCA GCGGCAAACC TAGGCTTATC AATCGTGCCC TGACTCGTTT GTTGGAGCAG 
TTACAAGATG CTCAGCGAGA GCGTGGCCGA TTTGATAAAT TTATTCGCTC CAATGTGTTT 
CTCGACCCTC AAACCCGCAT AGGTAATCAG CTATTTTTCG TGAATCGTCT CGATGGACTC 
AGCCAAGATC AGCAGATGAT TTCCCATGGG GCTATGTACC TTATTGACTT TGCCGATCTG 
GACATAGCTC AACAAGAAAA AGGCGATCAG TTTATTGCGG ATTTCTTAAC CCAGTTGGTT 
AACAGTGTGA ACCAGGCCTT AACTGAGCAT GTGGACAGTA TTTTTAGCCG CAGAAGTTTT 
CAGCAGTTCG CCATAGTGGT GCCTCAGCTG TCGTTAACTG AGGCGGACTC ACTGGCCAAT 
AAATTGCTAA AAATTTGCAT CAGTCAGGCG GGTAAAGATT TTCCTAATCA AGATAATTTC 
GTCCACTTAG GGGCCGCCTT TTATCGGGCT GGGGATAATC AACAGCAATT GCTCGAAGAA 
GCCGATATGG CGCTTAAAGC CGCGCAGTTA CAAAGAAGCA ATAATTGGTT TATGTATGAT 
AAGGGCGCGG TGGATGAAGA GATTGCCAAA GGCTCGGTGC GCTGGCGAAG TTTCTTGGAA 
TCAAGCTTAC TCAATAAGCG GGTGATAAGT TTTTCTCAAG GGGTGTTTGA TAGCGATAAT 
ACGCTACATC ACCATGAGGT CTTCAGCCGT ATTCGTGATA ATCAAGGCAA GGATGTGCGC 
GCGACCTTAT TTATCCCCAT GGCCAATAAG TGCGGCCTGA TGCCGCAAAT TGAGCGGCAG 
CTGCTGGAGC GAGTATTTTT TACCTTAATG CCCCAAAGCC AAGCTAATTA CAGTGTGAAC 
TTAAGCTTAG ACTCTCTTAC TAGCCGCGCC TTTATGCGCT GGCTCAAGAC TCTATTATTA 
GAGCACAGGC CTTTAGCCAC CCGGCTTATT TTTGAAATAT CAGAAGATAT TATTGTTAAA 
CACCAGAGCA AGTTGACCAC ACATTTAGAC ATGTTGAAAA AAATGGGCGC TAAACTGTGT 
GTCGACCACG TAGGACAACA AGTGGTGGGT ACACATTATA TCCAAGAATG TGATTTTGAT 
TTTGTGAAGT TGCATAAATC TATCATTCGA AAAATCCATT TACGCTCAGA AAATCAATTA 
TTTATAAGAA GCTTTATTGG CGGTTTATAC CGCGCCGAAG TGCAAGTGTT TGCCGAGGGA 
GTAACAAGCT TCGAAGAATG GCAAACCTTA AAGATTTTAG GTGTGAGCGC CGCACAAGGT 
GAATTTCTCG GTGAAGTACA AGAAGCTAAT TACACTGTGA ATGTTTCTAA ATAG 

 

Protein sequence

MKLTKILTKK LTSFWLLSLM AVACVFLLCA GISFIQLTYK FQQQQVKDFN TLMTQQVQHF 
SHLENAAINQ VQRDDEQGRS QAQLAHWLPQ LLANYHTVEF RLFEGDKLRY SYNNGANLQQ 
GVRYKQALDG HWRMELVLVA PFYLHALSWQ EYWVLLIGFA AIFALVFYGQ RWFAQELDGV 
EELAMRSHLI LDGKLEQALA SAGSGKPRLI NRALTRLLEQ LQDAQRERGR FDKFIRSNVF 
LDPQTRIGNQ LFFVNRLDGL SQDQQMISHG AMYLIDFADL DIAQQEKGDQ FIADFLTQLV 
NSVNQALTEH VDSIFSRRSF QQFAIVVPQL SLTEADSLAN KLLKICISQA GKDFPNQDNF 
VHLGAAFYRA GDNQQQLLEE ADMALKAAQL QRSNNWFMYD KGAVDEEIAK GSVRWRSFLE 
SSLLNKRVIS FSQGVFDSDN TLHHHEVFSR IRDNQGKDVR ATLFIPMANK CGLMPQIERQ 
LLERVFFTLM PQSQANYSVN LSLDSLTSRA FMRWLKTLLL EHRPLATRLI FEISEDIIVK 
HQSKLTTHLD MLKKMGAKLC VDHVGQQVVG THYIQECDFD FVKLHKSIIR KIHLRSENQL 
FIRSFIGGLY RAEVQVFAEG VTSFEEWQTL KILGVSAAQG EFLGEVQEAN YTVNVSK