| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3338 |
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| Symbol | |
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| ID | 4019886 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3980963 |
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| End bp | 3981517 |
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| Gene Length | 555 bp |
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| Protein Length | 184 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637957391 |
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| Product | MSHA pilin protein MshD |
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| Protein accession | YP_564337 |
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| Protein GI | 91794686 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0330251 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGAACTA AGTCCATCAA AGGAAGAGGT ACAGCGCAAG CAAAAGCCGC AACAGGCAAT
CAAGGCGGTT TTACCTTGAT GGAGCTGGTG GTGGGTATGC TAGTCATGAG TATTGCCATT
GTCATGATGA CCAGCATGTT GTTTCCACAG GCGGACAGGG CCGCAAAAAC CTTGCATAGA
GTGCGCTCGG CTGAACTTGC CCACGGTATC TTAAATGAGA TTTGGGGCAA GCGTTATGAT
CAAAATACTA ATGCCAACGG CGGTGTACCA GCATGTGGTA GTCCATTAGG CTTGCCCTGT
AGCCTTGAAA CTGAGTTTGG ACCTGATGGT ACAGAAACCC GTGAGCAGTT TAACGATGTC
GATGATTACC ATGGGTTAAG CGAAACCAAT TTAATGCTTA ACTCAAGCCA AAGCTATAAC
GACTTTTACC CTAACTATCG CCTCGCAGTG AGTGTTGTTT TAGGCGCTGC GGCTAATACT
AAGTTAGTAA CTGTCAATGT GACTACTCCA GATGGCGAAG TGATCACTTA CCAAGCCTTG
AGGAGTAATT ACTGA
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| Protein sequence | MRTKSIKGRG TAQAKAATGN QGGFTLMELV VGMLVMSIAI VMMTSMLFPQ ADRAAKTLHR
VRSAELAHGI LNEIWGKRYD QNTNANGGVP ACGSPLGLPC SLETEFGPDG TETREQFNDV
DDYHGLSETN LMLNSSQSYN DFYPNYRLAV SVVLGAAANT KLVTVNVTTP DGEVITYQAL
RSNY
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