| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3315 |
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| Symbol | |
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| ID | 4019863 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 3946820 |
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| End bp | 3949756 |
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| Gene Length | 2937 bp |
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| Protein Length | 978 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637957368 |
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| Product | excinuclease ABC, A subunit |
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| Protein accession | YP_564314 |
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| Protein GI | 91794663 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0178] Excinuclease ATPase subunit |
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| TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000294803 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATAAGA TTGAAATACG CGGTGCTAGA ACCCACAATC TCAAAAATAT TAACCTGACG
ATACCAAGAG ATAAACTCAT TGTTATCACA GGCTTATCTG GTTCTGGTAA ATCTTCACTC
GCCTTCGATA CCTTGTATGC AGAAGGTCAG CGCCGCTATG TGGAGTCCTT ATCAGCTTAT
GCTCGCCAGT TCTTAAGCAT GATGGAAAAG CCCGATGTGG ATCACATCGA AGGCCTAAGC
CCAGCGATTT CTATCGAACA GAAATCCACC TCCCACAATC CGCGTTCCAC TGTGGGTACT
ATCACAGAAA TTTACGACTA TTTACGTTTA TTGTTCGCCC GAGTGGGCGA GCCACGCTGC
CCAACTCACG GCCAAGCGCT TGCGGCACAA ACAGTGAGCC AGATGGTAGA CAAGGTGCTG
AGCTTGCCCG AAGGCAGCAA ACAGATGTTA TTGGCCCCCG TGGTCAAGGC CCGCAAGGGT
GAGCACGTTA AGTTATTAGA AAGCCTATCG GCTCAAGGTT ATATTCGCGC CCGCATCGAT
GGCGAAGTGT GTGACTTAAC TGACCCTCCA ACTCTTGAGC TTCACATTAA GCACACCATA
GAAGTGGTGG TCGACCGCTT TAAAGTGCGT GAAGACATGA AGCAGCGCCT TGCCGAATCA
TTCGAAACCG CCTTAGAGCT TTCTGGCGGC ATCGCCATCA TCGCCTCCAT GGAAGCGGAC
AGCAAAGACG AAGAACTGAT ATTTTCGGCC AATTTCGCCT GCACTCAATG CGGTTATTCC
ATGGCCGAGC TTGAGCCCAG AATTTTCTCT TTTAATAACC CCGCCGGCGC TTGCCCTACC
TGTGACGGCC TTGGTGTACA GCAGTTCTTC GACCCTGAGC GCATCATTAC CGATGATAAG
TTGTCTTTAG CGGGCGGCGC CATTCGTGGC TGGGATAAAC GCAACTTCTA TTATTTCCAA
ATGCTCACCT CCTTAGGGGA ACATTATAAA TTTGATGTGG ATACCCCTTA CGCCAAACTC
AGTGACAAGA TCAAAAAAAT CGTCCTCTTT GGCTCAGGTA AGCAGAGCAT CGCCTTTAAA
TACACCAACG ATCGCGGCGA TGTCGTCAGT CGCAATCACC CCTTCGAAGG CATACTCAAT
AACATGGACA GGCGCTATCG CGAGACCGAA AGCAATTCGG TGCGTGATGA ATTGGCTAAG
TTTATGAATA AGCAGCCCTG TAGTAGCTGC CACGGCTCGC GCCTGCGTGA AGAAGCCCGT
CATGTGTTTA TCGGCGACAT TAACTTGCCT ATGCTGACCA CTTGGTCAAT TGGCGAGGCC
ACTGACTATT TCAATAACGT CACCTTCGAA GGACAGCGAG CGCAAATTGC CGATAAAATC
CTTAAAGAAG TCTGCGACCG CTTAGGTTTT CTGGTCAATG TGGGGCTTAA TTATTTAAGC
TTATCGCGCT CATCTGAATC ACTTTCTGGC GGTGAAGCTC AGCGCATTAG GCTTGCAAGC
CAAATTGGTG CTGGGCTTGT AGGGGTGATG TACGTGCTGG ATGAGCCCTC TATTGGCTTG
CATCAACGAG ATAACGAGCG CTTACTGCAA ACCCTTATTC ATCTGCGGGA TTTAGGCAAT
ACCGTCATAG TAGTCGAACA TGATGAAGAT GCCATTCGCA TGGCAGACCA CATTATTGAT
ATCGGCCCTG GCGCTGGTGT ACACGGCGGC GAAGTTATCT GCGCCGGTAA TCTTGAGGAC
ATTATCAATT GCGAAGCTTC CATCACTGGG CAATATATTT CTGGCAAGAA GCAAATTCAT
GTGGGTGACA AGCGCACCCC CATTGATGAA ACCAAGCAGA TAAAACTCTT TGGTGCCCGC
GGCAATAATC TCAAAAACGT CGACTTAAGC ATCCCCCTTG GCTTGTTTAC CTGCGTGACC
GGCGTCTCAG GCTCCGGCAA ATCGACGCTT ATCAACGATA CCTTCTTTAA AATTGCCCAT
AGGATGCTCA ATGGCGCTAC CGTTGATGAA CCCTCCCCTT ATGATCGCAT CGAAGGCATG
GAGCAGTGCG ATAAAGTGGT CGATATCGAC CAGAGCCCCA TTGGCCGCAC GCCGCGCTCA
AACCCTGCCA CCTACACAGG TATTTTCACC CCAATACGGG AACTGTTTGC TGGCACCCAA
GAATCACGTA CCCGTGGCTA CTTGGTTGGC CGCTTCTCCT TTAACGTCAA AGGCGGTCGC
TGTGAAGCCT GCCAAGGCGA TGGCTTAATT AAAGTAGAAA TGCACTTCCT GCCTGACGTG
TACGTGCCTT GTGATAACTG TAAAGGCAAG CGCTACAACC GCGAAACCTT AGACGTGAAA
TACAAGGGTA AGAACATTCA TGAAGTGCTG CAGATGACAG TGGAAGAGGC GCGTGTATTC
TTCGATGCTA TCCCCTCTAT TGCCCGGAAA TTGCAAACTC TGATGGATGT CGGCCTGTCT
TATATTCGCC TAGGCCAAAG CGCCACTACC TTGTCTGGCG GTGAGGCTCA GCGAGTCAAA
CTCGCAAAAG AATTATCTAA GCGCGATACC GGCAAAACCT TATACATTTT GGATGAACCG
ACAACTGGGC TACACTTTGC CGACATTCAG CTATTATTGG ATGTATTACA TAGACTTAAA
TCACACGGCA ACACCTTGGT TGTGATAGAG CACAACCTAG ATGTGATTAA AACCGCCGAT
TGGATAGTGG ATTTAGGCCC AGAAGGCGGC GCCGGAGGCG GCAGCATTTT GGTCACTGGC
ACTCCAGAAG AGGTGGCTAA ATGTAAGCAC TCCCACACGG CGCGTTTCTT GAAGCCATTA
TTAGAAAATC AAAAGTTAGC AAATCAAAAG TTGGTAAATC AAAAGTTGGC TAGTCAAACT
ATAGCCAGTC AAAAAAAGCA GCCAAAAGCC AAAGCAAAAA AAGAAACTAA GTCGTAA
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| Protein sequence | MDKIEIRGAR THNLKNINLT IPRDKLIVIT GLSGSGKSSL AFDTLYAEGQ RRYVESLSAY
ARQFLSMMEK PDVDHIEGLS PAISIEQKST SHNPRSTVGT ITEIYDYLRL LFARVGEPRC
PTHGQALAAQ TVSQMVDKVL SLPEGSKQML LAPVVKARKG EHVKLLESLS AQGYIRARID
GEVCDLTDPP TLELHIKHTI EVVVDRFKVR EDMKQRLAES FETALELSGG IAIIASMEAD
SKDEELIFSA NFACTQCGYS MAELEPRIFS FNNPAGACPT CDGLGVQQFF DPERIITDDK
LSLAGGAIRG WDKRNFYYFQ MLTSLGEHYK FDVDTPYAKL SDKIKKIVLF GSGKQSIAFK
YTNDRGDVVS RNHPFEGILN NMDRRYRETE SNSVRDELAK FMNKQPCSSC HGSRLREEAR
HVFIGDINLP MLTTWSIGEA TDYFNNVTFE GQRAQIADKI LKEVCDRLGF LVNVGLNYLS
LSRSSESLSG GEAQRIRLAS QIGAGLVGVM YVLDEPSIGL HQRDNERLLQ TLIHLRDLGN
TVIVVEHDED AIRMADHIID IGPGAGVHGG EVICAGNLED IINCEASITG QYISGKKQIH
VGDKRTPIDE TKQIKLFGAR GNNLKNVDLS IPLGLFTCVT GVSGSGKSTL INDTFFKIAH
RMLNGATVDE PSPYDRIEGM EQCDKVVDID QSPIGRTPRS NPATYTGIFT PIRELFAGTQ
ESRTRGYLVG RFSFNVKGGR CEACQGDGLI KVEMHFLPDV YVPCDNCKGK RYNRETLDVK
YKGKNIHEVL QMTVEEARVF FDAIPSIARK LQTLMDVGLS YIRLGQSATT LSGGEAQRVK
LAKELSKRDT GKTLYILDEP TTGLHFADIQ LLLDVLHRLK SHGNTLVVIE HNLDVIKTAD
WIVDLGPEGG AGGGSILVTG TPEEVAKCKH SHTARFLKPL LENQKLANQK LVNQKLASQT
IASQKKQPKA KAKKETKS
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