Gene Sden_3306 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_3306 
Symbol 
ID4019854 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp3936622 
End bp3938757 
Gene Length2136 bp 
Protein Length711 aa 
Translation table11 
GC content47% 
IMG OID637957359 
Productpeptidyl-dipeptidase Dcp 
Protein accessionYP_564305 
Protein GI91794654 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0339] Zn-dependent oligopeptidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTAAAT CTCTCATCAC AGTCGCCGTA AGTGCGACGC TTATGCTAAG CGCCTGTCAA 
GATAACTCAG TGGCGGACAG CAATATGACC ACCCAAGCTC CAGCAAGCCA AACGGCAAGC
GCTGTAAACG TGCTATTAAC CGCTAGTCCA CTGCAAGATT TTGCACCGCA ATTTGATCAA
ATCAAAGCCA GTGATTTTGT GCCTGCATTC ACCCAAGGCA TGGCAGAGCA TAAAGCCGAA
ATCGACGCCA TCATCAACAA CAGCGAGCCT GCGAGCTTTG ATAACACCTT AATGGCATTG
GAAAAATCAG GGGCGTTACT CAATCGCACC CAAAGAGCCT TCTTTACTTT ATCTGGGCTC
ATCTCTGATG ATGATTTCAT CCAAATTGAG CAAGACATGG TGCCGTTATT AACCAGCCAT
GAAGACAACA TCTATTTAGA TGCTAAGTTG TTTTCCAAAA TTGATGCCAT TTACCAAGCC
AAGGCGGCAT TAACAGGCGA AGATCTACGC TTAATCGAGG TCTATTATGA TCAATTTGTT
CGCGCAGGCG CCAAGCTCGG GGCAGACGAT AAAGCCAAGA TGCGCACACT CAACGGCAAG
CTGGCAAAAC TTGAGACTAA CTTCTCACAG AATATACTTA AGTCTTTCAA AAACGATGTT
ATTTTAGTTG AGGACAAAGC TCAGCTTGCC GGTTTGTCTG ATGACACGAT TGCTTCACTC
GCCGCAGCTG CCAAAGCCGT TGGCAAAACA GGCTATATGA TCACCCTAGT GAACACTACT
ACTCAGCCAC TGCTTTCAAG TCTTGAAAAC CGTGAGTTAA GACAGAAAAT CTGGGAAACC
TCAGCCTATC GCGCCATGGA CACCAATGCG CCACTGAATA TCAAAATCGC TCAGCTTAGG
GCAGAAAAGG CCGCCTTGCT TGGCTTTAAA GATTGGGCCA GCTATTCGGT TGCCAATCAA
ATGGCTAAGA CCCCAGAAGC GGTTTATAGC ATTTTAGATG ACCTAGCCCC TAAAGCCTTA
GCCAAAGCCA AGATTGAAGC TTTGGATATT CAAGCTGAAA TCAAAAAAGA CGGTAAAGAT
TTCAAACTTG AAGCGTGGGA CTGGGCCTAT TATGGTGACA AGGTTCGTCA AGCTAAATAC
GATTTAGATG AAAACCACGT TAAGCCGTAT TTTGAATTTA ATACTGTGCT CAATGATGGC
CTATTCTTCG CCATGAATAA GCTTTACGGC ATCACAGTCA AAAGCCGCAG CGATTTACCC
GTATGGCACA AAGACGTACT CGCCTATGAA GTATTCAACC AAGATGGCAG TACCATAGGC
TTATTCTATC TTGACGCTTA TGCCCGCGAA GGCAAGAGTG GTGGCGCCTG GATGGACGAG
CTAGTAAGCC AATCGACCTT ACTTAACACT AAGCCTGTGG TGTATAACTC GCTGAATATT
CCAAAACCCG CAGAAGGTCA ACCCACCTTG ATGACCTTCG ATGAAGTTTC CACCTTATTC
CATGAATTCG GTCATGGCAT TCATGGGTTA TTCTCTCAGG TGAAATACCC AAGCCTTGCA
GGCACAGCAA CGCCTAGGGA CTTTGTCGAA TTCCCCTCTC AAGCCAATGA AGATTGGAGC
ATAGAGCCGC AGGTTATTGC CAACTATGCT AAGCACTACC AAACTGGCGA GGCTATCCCC
GCCGAATTAC TGGCTACGGT ATTAGAGGCC CAGACCTTCA ACCAAGGTTT TGGCACCACA
GAATATTTGG CGGCTGCACT TTTGGATATG GAATGGCACT CTATTGCGCC TGGCACTGAA
ATCAAAGACG TGCAAACGTT CGAGCAGCAA GCGCTAGCAA AACACGGCTT GGATTTTAAT
CCTGTTCCCG CCCGCTACAA GACCACTTAT TTTAGCCACA GCTTCGGCGG CTATTCAGCA
GGATATTATG CTTACCTGTG GACTGAGGTA TTTGCCGCAG ACTCGTTCGC TCATATGGAC
CAGCAAGGCG GATTAACCCT AGAGAACGGC AACAAATACC GTCAAACCAT TTTGTCTAAA
GGCAACAGCC AAGACTTGAT GCAAGACTAT ATCGATTTTA GTGGCAGTAA GCCCACCACT
GAAGCCTTGC TTAAACGCCG TGGTTTAGTG AACTAA
 
Protein sequence
MRKSLITVAV SATLMLSACQ DNSVADSNMT TQAPASQTAS AVNVLLTASP LQDFAPQFDQ 
IKASDFVPAF TQGMAEHKAE IDAIINNSEP ASFDNTLMAL EKSGALLNRT QRAFFTLSGL
ISDDDFIQIE QDMVPLLTSH EDNIYLDAKL FSKIDAIYQA KAALTGEDLR LIEVYYDQFV
RAGAKLGADD KAKMRTLNGK LAKLETNFSQ NILKSFKNDV ILVEDKAQLA GLSDDTIASL
AAAAKAVGKT GYMITLVNTT TQPLLSSLEN RELRQKIWET SAYRAMDTNA PLNIKIAQLR
AEKAALLGFK DWASYSVANQ MAKTPEAVYS ILDDLAPKAL AKAKIEALDI QAEIKKDGKD
FKLEAWDWAY YGDKVRQAKY DLDENHVKPY FEFNTVLNDG LFFAMNKLYG ITVKSRSDLP
VWHKDVLAYE VFNQDGSTIG LFYLDAYARE GKSGGAWMDE LVSQSTLLNT KPVVYNSLNI
PKPAEGQPTL MTFDEVSTLF HEFGHGIHGL FSQVKYPSLA GTATPRDFVE FPSQANEDWS
IEPQVIANYA KHYQTGEAIP AELLATVLEA QTFNQGFGTT EYLAAALLDM EWHSIAPGTE
IKDVQTFEQQ ALAKHGLDFN PVPARYKTTY FSHSFGGYSA GYYAYLWTEV FAADSFAHMD
QQGGLTLENG NKYRQTILSK GNSQDLMQDY IDFSGSKPTT EALLKRRGLV N