Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_3306 |
Symbol | |
ID | 4019854 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 3936622 |
End bp | 3938757 |
Gene Length | 2136 bp |
Protein Length | 711 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637957359 |
Product | peptidyl-dipeptidase Dcp |
Protein accession | YP_564305 |
Protein GI | 91794654 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0339] Zn-dependent oligopeptidases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCGTAAAT CTCTCATCAC AGTCGCCGTA AGTGCGACGC TTATGCTAAG CGCCTGTCAA GATAACTCAG TGGCGGACAG CAATATGACC ACCCAAGCTC CAGCAAGCCA AACGGCAAGC GCTGTAAACG TGCTATTAAC CGCTAGTCCA CTGCAAGATT TTGCACCGCA ATTTGATCAA ATCAAAGCCA GTGATTTTGT GCCTGCATTC ACCCAAGGCA TGGCAGAGCA TAAAGCCGAA ATCGACGCCA TCATCAACAA CAGCGAGCCT GCGAGCTTTG ATAACACCTT AATGGCATTG GAAAAATCAG GGGCGTTACT CAATCGCACC CAAAGAGCCT TCTTTACTTT ATCTGGGCTC ATCTCTGATG ATGATTTCAT CCAAATTGAG CAAGACATGG TGCCGTTATT AACCAGCCAT GAAGACAACA TCTATTTAGA TGCTAAGTTG TTTTCCAAAA TTGATGCCAT TTACCAAGCC AAGGCGGCAT TAACAGGCGA AGATCTACGC TTAATCGAGG TCTATTATGA TCAATTTGTT CGCGCAGGCG CCAAGCTCGG GGCAGACGAT AAAGCCAAGA TGCGCACACT CAACGGCAAG CTGGCAAAAC TTGAGACTAA CTTCTCACAG AATATACTTA AGTCTTTCAA AAACGATGTT ATTTTAGTTG AGGACAAAGC TCAGCTTGCC GGTTTGTCTG ATGACACGAT TGCTTCACTC GCCGCAGCTG CCAAAGCCGT TGGCAAAACA GGCTATATGA TCACCCTAGT GAACACTACT ACTCAGCCAC TGCTTTCAAG TCTTGAAAAC CGTGAGTTAA GACAGAAAAT CTGGGAAACC TCAGCCTATC GCGCCATGGA CACCAATGCG CCACTGAATA TCAAAATCGC TCAGCTTAGG GCAGAAAAGG CCGCCTTGCT TGGCTTTAAA GATTGGGCCA GCTATTCGGT TGCCAATCAA ATGGCTAAGA CCCCAGAAGC GGTTTATAGC ATTTTAGATG ACCTAGCCCC TAAAGCCTTA GCCAAAGCCA AGATTGAAGC TTTGGATATT CAAGCTGAAA TCAAAAAAGA CGGTAAAGAT TTCAAACTTG AAGCGTGGGA CTGGGCCTAT TATGGTGACA AGGTTCGTCA AGCTAAATAC GATTTAGATG AAAACCACGT TAAGCCGTAT TTTGAATTTA ATACTGTGCT CAATGATGGC CTATTCTTCG CCATGAATAA GCTTTACGGC ATCACAGTCA AAAGCCGCAG CGATTTACCC GTATGGCACA AAGACGTACT CGCCTATGAA GTATTCAACC AAGATGGCAG TACCATAGGC TTATTCTATC TTGACGCTTA TGCCCGCGAA GGCAAGAGTG GTGGCGCCTG GATGGACGAG CTAGTAAGCC AATCGACCTT ACTTAACACT AAGCCTGTGG TGTATAACTC GCTGAATATT CCAAAACCCG CAGAAGGTCA ACCCACCTTG ATGACCTTCG ATGAAGTTTC CACCTTATTC CATGAATTCG GTCATGGCAT TCATGGGTTA TTCTCTCAGG TGAAATACCC AAGCCTTGCA GGCACAGCAA CGCCTAGGGA CTTTGTCGAA TTCCCCTCTC AAGCCAATGA AGATTGGAGC ATAGAGCCGC AGGTTATTGC CAACTATGCT AAGCACTACC AAACTGGCGA GGCTATCCCC GCCGAATTAC TGGCTACGGT ATTAGAGGCC CAGACCTTCA ACCAAGGTTT TGGCACCACA GAATATTTGG CGGCTGCACT TTTGGATATG GAATGGCACT CTATTGCGCC TGGCACTGAA ATCAAAGACG TGCAAACGTT CGAGCAGCAA GCGCTAGCAA AACACGGCTT GGATTTTAAT CCTGTTCCCG CCCGCTACAA GACCACTTAT TTTAGCCACA GCTTCGGCGG CTATTCAGCA GGATATTATG CTTACCTGTG GACTGAGGTA TTTGCCGCAG ACTCGTTCGC TCATATGGAC CAGCAAGGCG GATTAACCCT AGAGAACGGC AACAAATACC GTCAAACCAT TTTGTCTAAA GGCAACAGCC AAGACTTGAT GCAAGACTAT ATCGATTTTA GTGGCAGTAA GCCCACCACT GAAGCCTTGC TTAAACGCCG TGGTTTAGTG AACTAA
|
Protein sequence | MRKSLITVAV SATLMLSACQ DNSVADSNMT TQAPASQTAS AVNVLLTASP LQDFAPQFDQ IKASDFVPAF TQGMAEHKAE IDAIINNSEP ASFDNTLMAL EKSGALLNRT QRAFFTLSGL ISDDDFIQIE QDMVPLLTSH EDNIYLDAKL FSKIDAIYQA KAALTGEDLR LIEVYYDQFV RAGAKLGADD KAKMRTLNGK LAKLETNFSQ NILKSFKNDV ILVEDKAQLA GLSDDTIASL AAAAKAVGKT GYMITLVNTT TQPLLSSLEN RELRQKIWET SAYRAMDTNA PLNIKIAQLR AEKAALLGFK DWASYSVANQ MAKTPEAVYS ILDDLAPKAL AKAKIEALDI QAEIKKDGKD FKLEAWDWAY YGDKVRQAKY DLDENHVKPY FEFNTVLNDG LFFAMNKLYG ITVKSRSDLP VWHKDVLAYE VFNQDGSTIG LFYLDAYARE GKSGGAWMDE LVSQSTLLNT KPVVYNSLNI PKPAEGQPTL MTFDEVSTLF HEFGHGIHGL FSQVKYPSLA GTATPRDFVE FPSQANEDWS IEPQVIANYA KHYQTGEAIP AELLATVLEA QTFNQGFGTT EYLAAALLDM EWHSIAPGTE IKDVQTFEQQ ALAKHGLDFN PVPARYKTTY FSHSFGGYSA GYYAYLWTEV FAADSFAHMD QQGGLTLENG NKYRQTILSK GNSQDLMQDY IDFSGSKPTT EALLKRRGLV N
|
| |