Gene Sden_3303 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_3303 
Symbol 
ID4019851 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp3931857 
End bp3933407 
Gene Length1551 bp 
Protein Length516 aa 
Translation table11 
GC content48% 
IMG OID637957356 
Productamino acid/peptide transporter 
Protein accessionYP_564302 
Protein GI91794651 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3104] Dipeptide/tripeptide permease 
TIGRFAM ID[TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACAATA GCGCTGCTGT GGAAAATAGC TTGGATGTGA CTAATAACGA GAAAGAGACT 
AATCAAGTAC ACCCAAAGGG CTTATACGTG TGCTTTTTTA CTGAGATGTG GGAGCGATTT
AGCTTCTATG GCCTAAAGGC CTTGCTGATT TTTTATCTGA CAGAGCATTT CTTGTTTAGT
GACCAAGAGG CTGCCAGCAT CTTTGGTAAC TACTTTGCTT TAGTTTACGC CTTGCCCTTA
GTGGGTGGCG TATTGGCTGA TCGATATTTA GGTGCAAAGC GGGCTGTAGT CTTGGGCGCT
GTCTTGTTGT GTTTTGGCCA TTTGGGAATG ACATTTGAAG GCAGCGCTGC TTATATCAAC
GAGTCGGGCG AACGTGTTTC GAGCACAGGG TTGACGGCAT TTTACCTGTC TTTGTCATTT
ATTATCGTCG GGGTGGGTTT TTTAAAGCCT AATATTTCCA GCATAGTGGG TAAGCTGTAT
CAAGTGAATG ACCCTAGAAA AGATGCGGGT TTTACCTTGT TTTATATGGG GATTAATTTA
GGTTCAGCCT TGGCGGCGAT AATATGCGGC TATGTGGGCG TCACCTACGG CTGGGCTTAT
GGCTTTGGTT TGGCGGGTTT TGGCATGCTA CTCGGGCTGG TGGTGTTCCT GCGTGGGCAT
AAGCACCTGC TTGGGGTTGC CGATGCACCG AATGAAGCTA AGTTAACTGA GCCTGTGTGG
TTTAGCATTA GCCGAGAGAA GCTGATTTAT CTGGGCAGCC TAGGTTTGGT GGCGGTTGTT
ATGCTGCTTA TCGGTAATCA TCAGCTGGTG GCAGGAGTAT TGGGGCTGGC ATTTGTGGCT
ATTGGTCTGT GGCTTGTATG GTATTGCCTC AATGAAGTGT CATCTGAAGT TAAACAAAAA
CTCTATGCCG CCGTCAGCCT CATCATGATG TCGACCGTGT TTTTCTTGTG TTTCTTGCAG
TCGGGGAGTT CGATGAACCT GTTTGCCGAT AGGTTAACTG ATAGGCTCGT TTTTGGGCTG
ACGATACCCG CGCCCATGCT GCAATCACTT AACGCCATTT TTATCATTAT GTTAGCGCCA
GTTTTTGCCA AGTTATGGCA ATGGCTAGCG AAGCATAATT ACTGCCCAAG TACGCCGATG
AAATTCTCGC TAGGGCTATT GCAAGTGGGC TTGGGCTTTT TGGCCTTGGT GGTTGGCTTG
TATTTCGCAG AAGGTAGTGA GCAAGTGGCC TTAGGTTGGT TAGTGCTGGC TTACTTGCTG
CACACTACGG GGGAATTATG CATCTCCCCC ATAGGGCTTT CAATGATCAC TAAATTATCC
GCGCCAAAAA TAGTTGGCCT TATGATGGGA TTATGGTTTC TTGGCTCTGC GATTGCTGAA
TTCATCGCCG CCTTGCTTGC AGGTCAAGCG AGCATGGATA TAGCAGGCAT CACTTCGCAT
CAAAGTTTCA GCTTACTCTA CCAAGACATA ATGTGGATTG CCTTGGGAGG CGCCTTGTTG
ACCTTCATCA TGTCGCCGCT GCTAAAGCGC TGGATGGGCG ATGTGGTTTA G
 
Protein sequence
MDNSAAVENS LDVTNNEKET NQVHPKGLYV CFFTEMWERF SFYGLKALLI FYLTEHFLFS 
DQEAASIFGN YFALVYALPL VGGVLADRYL GAKRAVVLGA VLLCFGHLGM TFEGSAAYIN
ESGERVSSTG LTAFYLSLSF IIVGVGFLKP NISSIVGKLY QVNDPRKDAG FTLFYMGINL
GSALAAIICG YVGVTYGWAY GFGLAGFGML LGLVVFLRGH KHLLGVADAP NEAKLTEPVW
FSISREKLIY LGSLGLVAVV MLLIGNHQLV AGVLGLAFVA IGLWLVWYCL NEVSSEVKQK
LYAAVSLIMM STVFFLCFLQ SGSSMNLFAD RLTDRLVFGL TIPAPMLQSL NAIFIIMLAP
VFAKLWQWLA KHNYCPSTPM KFSLGLLQVG LGFLALVVGL YFAEGSEQVA LGWLVLAYLL
HTTGELCISP IGLSMITKLS APKIVGLMMG LWFLGSAIAE FIAALLAGQA SMDIAGITSH
QSFSLLYQDI MWIALGGALL TFIMSPLLKR WMGDVV