Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_3303 |
Symbol | |
ID | 4019851 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 3931857 |
End bp | 3933407 |
Gene Length | 1551 bp |
Protein Length | 516 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637957356 |
Product | amino acid/peptide transporter |
Protein accession | YP_564302 |
Protein GI | 91794651 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3104] Dipeptide/tripeptide permease |
TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACAATA GCGCTGCTGT GGAAAATAGC TTGGATGTGA CTAATAACGA GAAAGAGACT AATCAAGTAC ACCCAAAGGG CTTATACGTG TGCTTTTTTA CTGAGATGTG GGAGCGATTT AGCTTCTATG GCCTAAAGGC CTTGCTGATT TTTTATCTGA CAGAGCATTT CTTGTTTAGT GACCAAGAGG CTGCCAGCAT CTTTGGTAAC TACTTTGCTT TAGTTTACGC CTTGCCCTTA GTGGGTGGCG TATTGGCTGA TCGATATTTA GGTGCAAAGC GGGCTGTAGT CTTGGGCGCT GTCTTGTTGT GTTTTGGCCA TTTGGGAATG ACATTTGAAG GCAGCGCTGC TTATATCAAC GAGTCGGGCG AACGTGTTTC GAGCACAGGG TTGACGGCAT TTTACCTGTC TTTGTCATTT ATTATCGTCG GGGTGGGTTT TTTAAAGCCT AATATTTCCA GCATAGTGGG TAAGCTGTAT CAAGTGAATG ACCCTAGAAA AGATGCGGGT TTTACCTTGT TTTATATGGG GATTAATTTA GGTTCAGCCT TGGCGGCGAT AATATGCGGC TATGTGGGCG TCACCTACGG CTGGGCTTAT GGCTTTGGTT TGGCGGGTTT TGGCATGCTA CTCGGGCTGG TGGTGTTCCT GCGTGGGCAT AAGCACCTGC TTGGGGTTGC CGATGCACCG AATGAAGCTA AGTTAACTGA GCCTGTGTGG TTTAGCATTA GCCGAGAGAA GCTGATTTAT CTGGGCAGCC TAGGTTTGGT GGCGGTTGTT ATGCTGCTTA TCGGTAATCA TCAGCTGGTG GCAGGAGTAT TGGGGCTGGC ATTTGTGGCT ATTGGTCTGT GGCTTGTATG GTATTGCCTC AATGAAGTGT CATCTGAAGT TAAACAAAAA CTCTATGCCG CCGTCAGCCT CATCATGATG TCGACCGTGT TTTTCTTGTG TTTCTTGCAG TCGGGGAGTT CGATGAACCT GTTTGCCGAT AGGTTAACTG ATAGGCTCGT TTTTGGGCTG ACGATACCCG CGCCCATGCT GCAATCACTT AACGCCATTT TTATCATTAT GTTAGCGCCA GTTTTTGCCA AGTTATGGCA ATGGCTAGCG AAGCATAATT ACTGCCCAAG TACGCCGATG AAATTCTCGC TAGGGCTATT GCAAGTGGGC TTGGGCTTTT TGGCCTTGGT GGTTGGCTTG TATTTCGCAG AAGGTAGTGA GCAAGTGGCC TTAGGTTGGT TAGTGCTGGC TTACTTGCTG CACACTACGG GGGAATTATG CATCTCCCCC ATAGGGCTTT CAATGATCAC TAAATTATCC GCGCCAAAAA TAGTTGGCCT TATGATGGGA TTATGGTTTC TTGGCTCTGC GATTGCTGAA TTCATCGCCG CCTTGCTTGC AGGTCAAGCG AGCATGGATA TAGCAGGCAT CACTTCGCAT CAAAGTTTCA GCTTACTCTA CCAAGACATA ATGTGGATTG CCTTGGGAGG CGCCTTGTTG ACCTTCATCA TGTCGCCGCT GCTAAAGCGC TGGATGGGCG ATGTGGTTTA G
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Protein sequence | MDNSAAVENS LDVTNNEKET NQVHPKGLYV CFFTEMWERF SFYGLKALLI FYLTEHFLFS DQEAASIFGN YFALVYALPL VGGVLADRYL GAKRAVVLGA VLLCFGHLGM TFEGSAAYIN ESGERVSSTG LTAFYLSLSF IIVGVGFLKP NISSIVGKLY QVNDPRKDAG FTLFYMGINL GSALAAIICG YVGVTYGWAY GFGLAGFGML LGLVVFLRGH KHLLGVADAP NEAKLTEPVW FSISREKLIY LGSLGLVAVV MLLIGNHQLV AGVLGLAFVA IGLWLVWYCL NEVSSEVKQK LYAAVSLIMM STVFFLCFLQ SGSSMNLFAD RLTDRLVFGL TIPAPMLQSL NAIFIIMLAP VFAKLWQWLA KHNYCPSTPM KFSLGLLQVG LGFLALVVGL YFAEGSEQVA LGWLVLAYLL HTTGELCISP IGLSMITKLS APKIVGLMMG LWFLGSAIAE FIAALLAGQA SMDIAGITSH QSFSLLYQDI MWIALGGALL TFIMSPLLKR WMGDVV
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