| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3296 |
|---|
| Symbol | |
|---|
| ID | 4019844 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 3924286 |
|---|
| End bp | 3926487 |
|---|
| Gene Length | 2202 bp |
|---|
| Protein Length | 733 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637957349 |
|---|
| Product | CheW-like protein |
|---|
| Protein accession | YP_564295 |
|---|
| Protein GI | 91794644 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0643] Chemotaxis protein histidine kinase and related kinases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGAAT TAGAACAAGT CTTAGGTTTG TATATTTCAG AGAGTAGAGA GCTACTGGAT
GAGATGGAAA CGCTATTACT CAATCTTGAA AATGAAGAAG ATAAAAGTGA AAGCCTTAAT
GGCATCTTTC GCGCTGCTCA TACCATCAAA GGATCGGCAG GGATTTTCTC ACTGGATGAA
GTGGTACATT TCACTCATGG GGTTGAGAGT TTACTGGATA AAATGCGCGA CGGAAAAATT
GCGCCTAACG CCGAACTGAC GTCATTACTA CTGGACTGCA AAGATCATAT CAGCCAGCTT
ATCGATAATG TGGAGAATAA AGCCAGCCTC ACTGAAGAAG CCTCATTAAA TGGTAAAACC
TTACTGCAAA CACTGATCAT AGTGGTGAAA CAAGGCGGCA CAGATGGTCC GCAAGATGTT
CCACCAGTCA CGACAAATGT CGCCACGACT CAGCCAGTTG AACGAGTCAA GAGCCCTAAA
GTGGAAAGTG ATAATTGGCA TATCTCGGTG CGCTATCATG AAGACTCCTT CCGTTTCGGC
ATGGACCCCT TAGCCATACT GCGCTATTTA GCCACCTTAG GCACCATAGA AACCATTAAA
ACCTTGTTCC CAGCCATGCC TGAAGCCCAA TATATGGATC CTGAATCTTG CTATCTGGGC
TATGAAATTA ACTTTAAAAG CCAAGCTGAT AAACAAGAAA TTGAAGGGGC ATTTGAATTT
ATTCGCGAAG ATAGCCAAGT GCATATCCTG CCGCCCAGTA GCCGCGTCAG CGATTACATC
AACTTAATTA AAGCTTTACC TGAAGAAGAG CTGCAACTCG GGGAAATTCT GGTCAAATGT
GGTTCGCTAA CCCCCAATGA ACTGGAATTT GCTCTGGGCT TGCAACGGGA GCTTAAAAGC
CAATCCATAG ATGTGCCCTT AGGCTCGATT GTGGTCAACA ATGGCCTGAC GCCGCAACCT
GTGCTTGAAT CTGCCATCGC AAAACAAAAT CAAATTAGGG ATGGTAAAAA CAAAGAAAGC
CAATCTGTTA GGGTCGATGC AGACAAGTTA GATCAGCTGA TAAATCTGGT CGGTGAACTG
GTCATTGCCG GCGCCAGCTC AAGCTTACAT GCCCACACCT CAGGTGACAG AAAATTGATC
GAGTCCTTCT CCTTATTAAC CCGTTTAATG GAAGAAGTCC GTGACGCCGC ATTGCAACTG
CGCATGGTGC AAATTGGCGG AACCTTTAGT CGTTTTCAAC GTGTGGTGAG GGATGTGGCC
AAAGAGTTAG GCAAAGACAT AGAGCTTGTG ATCACAGGCG CCGAAACTGA ACTTGATAAA
ACTGTGGTCG AGAAAATCAG CGATCCTTTA ATGCATTTGG TGCGTAACTC TATGGATCAT
GGCATAGAGG CCCCAGATGT TCGCATGAAC AAGCAAAAGT CTCCCAAAGG AAGGCTCTGT
CTCAATGCTT ACCATGATTC GGGCATGATA ATCATAGAAG TGTCCGATGA TGGCGCTGGC
TTAAATCATG AACGCATACT GCAAAAAGCC ATAGAAAAAG GCCTAGTACA AGAAGGTGAA
CAGCTGGACA TAAGCGAAAT CAACAACCTC ATTTTTGAAC CCGGATTTTC TACCGCAGAG
GCCGTCACTA ACCTTTCGGG AAGAGGGGTA GGCATGGATG TGGTTAAACG TAACATTACT
GCCCTGCGCG GCACTGTCGA TGTGCAAAGT ACCTTTGGTC AAGGGGCACT GTTTAGCATT
CGATTGCCAC TTACTCTCGC CATTATTGAG GGCTTCTTAG TGGAAATCGA TACCTCCTCG
TTCGTTATCC CCCTCAACAT GGTGCTGGAA TGTGTTGAAC TCAGTGAATA CAACTCGGAG
ATCGATCCTA ATACCCAGCA GAGTTACATC AATCTGCGTG GTGAAGTACT GCCCTTTATT
CGCTTAAGGC GCTTGTTCCA CTTAGGTGGA CAGACGCCAA AACGAGAGAA TGTCATCGTC
GTATCTTACC TAGGCAGCAA GGTGGGACTT GCTGTCGATA AACTAGTGGG AGAGTTCCAA
ACCGTCATCA AGCCGTTAGG TAATATTTTC AGTCACATTC AGGGAATTAG TGGCTCGACA
GTATTAGGCA GCGGTGAAGT GGCATTGATT TTAGATGTAC CCAACTTAGT CCAGAAAATA
TTGACAACAG AATCAGCCAA AGCCCTCTAC AGCCAAGCTT GA
|
|---|
| Protein sequence | MDELEQVLGL YISESRELLD EMETLLLNLE NEEDKSESLN GIFRAAHTIK GSAGIFSLDE
VVHFTHGVES LLDKMRDGKI APNAELTSLL LDCKDHISQL IDNVENKASL TEEASLNGKT
LLQTLIIVVK QGGTDGPQDV PPVTTNVATT QPVERVKSPK VESDNWHISV RYHEDSFRFG
MDPLAILRYL ATLGTIETIK TLFPAMPEAQ YMDPESCYLG YEINFKSQAD KQEIEGAFEF
IREDSQVHIL PPSSRVSDYI NLIKALPEEE LQLGEILVKC GSLTPNELEF ALGLQRELKS
QSIDVPLGSI VVNNGLTPQP VLESAIAKQN QIRDGKNKES QSVRVDADKL DQLINLVGEL
VIAGASSSLH AHTSGDRKLI ESFSLLTRLM EEVRDAALQL RMVQIGGTFS RFQRVVRDVA
KELGKDIELV ITGAETELDK TVVEKISDPL MHLVRNSMDH GIEAPDVRMN KQKSPKGRLC
LNAYHDSGMI IIEVSDDGAG LNHERILQKA IEKGLVQEGE QLDISEINNL IFEPGFSTAE
AVTNLSGRGV GMDVVKRNIT ALRGTVDVQS TFGQGALFSI RLPLTLAIIE GFLVEIDTSS
FVIPLNMVLE CVELSEYNSE IDPNTQQSYI NLRGEVLPFI RLRRLFHLGG QTPKRENVIV
VSYLGSKVGL AVDKLVGEFQ TVIKPLGNIF SHIQGISGST VLGSGEVALI LDVPNLVQKI
LTTESAKALY SQA
|
|---|
| |