Gene Sden_3220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_3220 
Symbol 
ID4019749 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp3855291 
End bp3857177 
Gene Length1887 bp 
Protein Length628 aa 
Translation table11 
GC content48% 
IMG OID637957273 
ProductDNA topoisomerase IV subunit B 
Protein accessionYP_564219 
Protein GI91794568 
COG category[L] Replication, recombination and repair 
COG ID[COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 
TIGRFAM ID[TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.128884 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCAATC AATATACCTC TGACGCAATT GAAGTTCTTA ATGGACTCGA CCCTGTAAAA 
CGCCGTCCAG GTATGTACAC AGATACCACT CGTCCTAACC ATTTAGGTCA AGAAGTCATA
GACAACAGTG TCGATGAAGC CTTGGCAGGT CACGCCACTA AGATTGAAGT GGTGCTGCAT
AGCGATAACT CATTAGAAGT CACAGATGAT GGCCGCGGTA TGCCAGTGGA TATACACCAG
GAAGAGGGCA TGTCAGGAGT CGAGTTGATT TTAACTAAGC TTCACGCCGG TGGTAAGTTC
TCCAATAAGA ACTACCAGTT CTCAGGCGGT TTACACGGTG TGGGTATTTC TGTGGTTAAC
GCCCTGTCTA AGCGAGTAGA AATTACCGTT AGGCGCGATG CCCAAGTTTA TGAAATGGCG
TTTGAGAATG GCTTTAAAGT CGAAGAACTT ACCGTCACTG GCACTTGTGG ACGGCGCAAT
ACCGGCACAA GAGTGCATTT CTGGCCAGAC CCTAGCTATT TCGATTCAGC CAATTATTCA
CTGACTAAGC TGATTTATTT ATTGCGCGCC AAAGCGGTGC TTTGCCCTGG GCTTAGAATT
AAGTTTACCA ATAAGCAAAA TGGCGAGACC CATGAGTGGT GCTATGAAAG TGGCTTAACC
GACTATTTGC AAGAGGCGGT TAAGGGCTCG GTTCTCTTGC CTCCAGAGCC GTTTGTCGGT
AGTTTTAAAG GCGACTTAGA GGCCGCCGAT TGGGCTGTGA CTTGGCTGCC AGAAGGCGGT
AATAGCATCT TCGAAAGTTA TGTGAACCTT ATTCCGACTC CCCTTGGCGG CACCCATGTG
AATGGCTTTC GCCAAGGTTT ATTGGAATCC ATGCGCGAGT TTTGTGAGTT TCGTAATTTG
GTGCCTCGGG GGCTTAAATT GTCGCCAGAG GATATCTGGG ACAAGGTGTC CTATGTATTG
TCGGTTAAGA TGCAAGACCC ACAATTTGCC GGCCAGACCA AAGAAAAACT CTCTAGTCGT
CAGTGCGCCG CGTTTGTGTC GGGTTTGGTA CGTGATTCTT TCTCGCTATG GCTTAACAGT
CATATCGAGT TGGCGGAGCA GTTGGCTGAG CTATGTATTA GTAGTGCGCA AAAGCGCCTA
AAAGCCGCTA AGAAGGTCGC CCGCAAGAAG GTGACTTCGG GTCCAGCATT GCCGGGTAAA
CTCACAGATT GTAGCGGCCA AGACCCCATG CGTGGTGAGC TATTTTTAGT GGAAGGTGAC
TCGGCAGGCG GCAGTGCGAA ACAGGCCAGA GATCGTGAGT TTCAAGCCAT CATGCCCCTC
AGGGGGAAAA TCTTAAATAC CTGGGAAGTG GATGCCTCAC AGGTGCTGGC CTCTCAAGAA
GTTCATGATA TCTCGGTAGC TATAGGTTGC GATCCTGACA GTGATGATAT TTCAGAGCTA
CGTTATGGTA AGATTTGCAT ACTTGCGGAT GCGGACTCCG ATGGACTTCA TATTGCCACC
TTGTTATGTG CTTTATTTCT AAAGCATTAC CGGGTGTTAG TTGAAAAAGG CCATGTCTAC
ATAGCCATGC CGCCATTGTT TCGTATCGAC ATAGGCAAAG ACGTTTTTTA TGCCTTAGAT
GAAGGCGAAA AGGCAGGGAT CTTAGACAGG ATCACCGCAG AAAAGAAAAA AGGTAAAGTT
CAAGTCACTC GCTTCAAGGG ACTAGGTGAG ATGAATCCTC TGCAACTGCG GGAAACCACT
ATGGATCCCA ATACTCGTCG CTTGGTGCAA TTGACCATAG ATGAGCCGCT GCAGACTGAC
GCCATGATGG ACATGCTGTT GGCGAAGAAG CGCTCGTCAG ATCGCAAGCT CTGGTTAGAG
AGTAAAGGTG ATTTGGCGCA GGTTTAA
 
Protein sequence
MTNQYTSDAI EVLNGLDPVK RRPGMYTDTT RPNHLGQEVI DNSVDEALAG HATKIEVVLH 
SDNSLEVTDD GRGMPVDIHQ EEGMSGVELI LTKLHAGGKF SNKNYQFSGG LHGVGISVVN
ALSKRVEITV RRDAQVYEMA FENGFKVEEL TVTGTCGRRN TGTRVHFWPD PSYFDSANYS
LTKLIYLLRA KAVLCPGLRI KFTNKQNGET HEWCYESGLT DYLQEAVKGS VLLPPEPFVG
SFKGDLEAAD WAVTWLPEGG NSIFESYVNL IPTPLGGTHV NGFRQGLLES MREFCEFRNL
VPRGLKLSPE DIWDKVSYVL SVKMQDPQFA GQTKEKLSSR QCAAFVSGLV RDSFSLWLNS
HIELAEQLAE LCISSAQKRL KAAKKVARKK VTSGPALPGK LTDCSGQDPM RGELFLVEGD
SAGGSAKQAR DREFQAIMPL RGKILNTWEV DASQVLASQE VHDISVAIGC DPDSDDISEL
RYGKICILAD ADSDGLHIAT LLCALFLKHY RVLVEKGHVY IAMPPLFRID IGKDVFYALD
EGEKAGILDR ITAEKKKGKV QVTRFKGLGE MNPLQLRETT MDPNTRRLVQ LTIDEPLQTD
AMMDMLLAKK RSSDRKLWLE SKGDLAQV