Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_3220 |
Symbol | |
ID | 4019749 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 3855291 |
End bp | 3857177 |
Gene Length | 1887 bp |
Protein Length | 628 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637957273 |
Product | DNA topoisomerase IV subunit B |
Protein accession | YP_564219 |
Protein GI | 91794568 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
TIGRFAM ID | [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.128884 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCAATC AATATACCTC TGACGCAATT GAAGTTCTTA ATGGACTCGA CCCTGTAAAA CGCCGTCCAG GTATGTACAC AGATACCACT CGTCCTAACC ATTTAGGTCA AGAAGTCATA GACAACAGTG TCGATGAAGC CTTGGCAGGT CACGCCACTA AGATTGAAGT GGTGCTGCAT AGCGATAACT CATTAGAAGT CACAGATGAT GGCCGCGGTA TGCCAGTGGA TATACACCAG GAAGAGGGCA TGTCAGGAGT CGAGTTGATT TTAACTAAGC TTCACGCCGG TGGTAAGTTC TCCAATAAGA ACTACCAGTT CTCAGGCGGT TTACACGGTG TGGGTATTTC TGTGGTTAAC GCCCTGTCTA AGCGAGTAGA AATTACCGTT AGGCGCGATG CCCAAGTTTA TGAAATGGCG TTTGAGAATG GCTTTAAAGT CGAAGAACTT ACCGTCACTG GCACTTGTGG ACGGCGCAAT ACCGGCACAA GAGTGCATTT CTGGCCAGAC CCTAGCTATT TCGATTCAGC CAATTATTCA CTGACTAAGC TGATTTATTT ATTGCGCGCC AAAGCGGTGC TTTGCCCTGG GCTTAGAATT AAGTTTACCA ATAAGCAAAA TGGCGAGACC CATGAGTGGT GCTATGAAAG TGGCTTAACC GACTATTTGC AAGAGGCGGT TAAGGGCTCG GTTCTCTTGC CTCCAGAGCC GTTTGTCGGT AGTTTTAAAG GCGACTTAGA GGCCGCCGAT TGGGCTGTGA CTTGGCTGCC AGAAGGCGGT AATAGCATCT TCGAAAGTTA TGTGAACCTT ATTCCGACTC CCCTTGGCGG CACCCATGTG AATGGCTTTC GCCAAGGTTT ATTGGAATCC ATGCGCGAGT TTTGTGAGTT TCGTAATTTG GTGCCTCGGG GGCTTAAATT GTCGCCAGAG GATATCTGGG ACAAGGTGTC CTATGTATTG TCGGTTAAGA TGCAAGACCC ACAATTTGCC GGCCAGACCA AAGAAAAACT CTCTAGTCGT CAGTGCGCCG CGTTTGTGTC GGGTTTGGTA CGTGATTCTT TCTCGCTATG GCTTAACAGT CATATCGAGT TGGCGGAGCA GTTGGCTGAG CTATGTATTA GTAGTGCGCA AAAGCGCCTA AAAGCCGCTA AGAAGGTCGC CCGCAAGAAG GTGACTTCGG GTCCAGCATT GCCGGGTAAA CTCACAGATT GTAGCGGCCA AGACCCCATG CGTGGTGAGC TATTTTTAGT GGAAGGTGAC TCGGCAGGCG GCAGTGCGAA ACAGGCCAGA GATCGTGAGT TTCAAGCCAT CATGCCCCTC AGGGGGAAAA TCTTAAATAC CTGGGAAGTG GATGCCTCAC AGGTGCTGGC CTCTCAAGAA GTTCATGATA TCTCGGTAGC TATAGGTTGC GATCCTGACA GTGATGATAT TTCAGAGCTA CGTTATGGTA AGATTTGCAT ACTTGCGGAT GCGGACTCCG ATGGACTTCA TATTGCCACC TTGTTATGTG CTTTATTTCT AAAGCATTAC CGGGTGTTAG TTGAAAAAGG CCATGTCTAC ATAGCCATGC CGCCATTGTT TCGTATCGAC ATAGGCAAAG ACGTTTTTTA TGCCTTAGAT GAAGGCGAAA AGGCAGGGAT CTTAGACAGG ATCACCGCAG AAAAGAAAAA AGGTAAAGTT CAAGTCACTC GCTTCAAGGG ACTAGGTGAG ATGAATCCTC TGCAACTGCG GGAAACCACT ATGGATCCCA ATACTCGTCG CTTGGTGCAA TTGACCATAG ATGAGCCGCT GCAGACTGAC GCCATGATGG ACATGCTGTT GGCGAAGAAG CGCTCGTCAG ATCGCAAGCT CTGGTTAGAG AGTAAAGGTG ATTTGGCGCA GGTTTAA
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Protein sequence | MTNQYTSDAI EVLNGLDPVK RRPGMYTDTT RPNHLGQEVI DNSVDEALAG HATKIEVVLH SDNSLEVTDD GRGMPVDIHQ EEGMSGVELI LTKLHAGGKF SNKNYQFSGG LHGVGISVVN ALSKRVEITV RRDAQVYEMA FENGFKVEEL TVTGTCGRRN TGTRVHFWPD PSYFDSANYS LTKLIYLLRA KAVLCPGLRI KFTNKQNGET HEWCYESGLT DYLQEAVKGS VLLPPEPFVG SFKGDLEAAD WAVTWLPEGG NSIFESYVNL IPTPLGGTHV NGFRQGLLES MREFCEFRNL VPRGLKLSPE DIWDKVSYVL SVKMQDPQFA GQTKEKLSSR QCAAFVSGLV RDSFSLWLNS HIELAEQLAE LCISSAQKRL KAAKKVARKK VTSGPALPGK LTDCSGQDPM RGELFLVEGD SAGGSAKQAR DREFQAIMPL RGKILNTWEV DASQVLASQE VHDISVAIGC DPDSDDISEL RYGKICILAD ADSDGLHIAT LLCALFLKHY RVLVEKGHVY IAMPPLFRID IGKDVFYALD EGEKAGILDR ITAEKKKGKV QVTRFKGLGE MNPLQLRETT MDPNTRRLVQ LTIDEPLQTD AMMDMLLAKK RSSDRKLWLE SKGDLAQV
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