| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3219 |
|---|
| Symbol | |
|---|
| ID | 4019748 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3853994 |
|---|
| End bp | 3855154 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637957272 |
|---|
| Product | L-sorbosone dehydrogenase, putative |
|---|
| Protein accession | YP_564218 |
|---|
| Protein GI | 91794567 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2133] Glucose/sorbosone dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00839547 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTCAAC GAGCGATTAA AGACCATAAC CAATGGCAAG CAATATGCAC TAGCATCACT
TGCTTGTTAT TGGGTCTATT TCAAACCAAC CTAGCCCTAG CTTCGCAACC TGTGATGATA
ACCGTCACTA AAGGTTTCGG GTTGTCTTTG TATGCCTCAG ATATCGGTGA TGCCAAACAA
ATGGCGCTCG GAGATGAAGG CACGCTGTTT GTGGGCTCTC AAAAAGATGG CAGCATTTAT
GCTTTAGTGG ACAGCGATAG CGATGGTCAA GTGGATAAGC GCTATGTGAT AGCCAAGGGA
CTTGAATATC CAGAAGCCAT TGCTTTTCAT AAGGGGGACT TGTATGTCGC CAATGAAGAG
CGAGTGCTGC GCTTTGAAGC TATCGAAAGT CGCTTGCGTC GCCCTGCTAG GCCAAGAGAA
GTCTATTCTG GCCTGCCCAG CATGGAAAAG AAACATGCCA GAGCCATGAG CTTCGGCCCA
GACGGCCGCC TGTACATCTC CATTAGTTCG CCTTGCAATG TGTGTGAATC ACCCGCACCT
TTTGGCAGCA TTATCGCTGT GAATGTCGAT ACCGGCGCCA GTGAACAAAT TGCCTTAGGC
ATTCGCACTG TCACAGGTTT TGATTGGTCA CCGACGTCGG GGCAATTGCT GTTTGCCGAT
CAGGGCCGCA ATTGGATGGG GGATAACCTG CCATTTGATG AAATCAATCG AGTCGAGGTC
GTAGGTAGCC ATTTTGGTTT CCCTTACCTG CATGGTAAAG CCGTGGTTGA ACCCGCCTAC
GACAAGCCAA AAAATCTTAA TATCAGCTTG CCAGAATTTG AACTGCCCGC TCACGTTGCC
CCCACAGGGC TGCATTTTTA CCGTGGCACT CAGTTCCCCA AACGTTATCA AGGCAAGCTT
TTTGTCGCCG AGAATGGTTC ATGGAACCGT TCCAGTAAAG TCGGCTATCA AATTGTCATG
TTAAATATGG AAGATGGGGT CATTCGCTCT CGAGAAACCG TGGTCAGTTT CCTCGATGGT
GAGTTTCCTG TCGCAAGACC TTATGCCTTA TTGACAGCAC CGGATGGGGC GCTGTTTATT
TCAGACGATC TGAAAGGTAA TGTCTATCGC ATGTATTACA AAGGTTCAGA CGCACCGCAG
GAAGAATTAG AAAATGAGTG A
|
|---|
| Protein sequence | MGQRAIKDHN QWQAICTSIT CLLLGLFQTN LALASQPVMI TVTKGFGLSL YASDIGDAKQ
MALGDEGTLF VGSQKDGSIY ALVDSDSDGQ VDKRYVIAKG LEYPEAIAFH KGDLYVANEE
RVLRFEAIES RLRRPARPRE VYSGLPSMEK KHARAMSFGP DGRLYISISS PCNVCESPAP
FGSIIAVNVD TGASEQIALG IRTVTGFDWS PTSGQLLFAD QGRNWMGDNL PFDEINRVEV
VGSHFGFPYL HGKAVVEPAY DKPKNLNISL PEFELPAHVA PTGLHFYRGT QFPKRYQGKL
FVAENGSWNR SSKVGYQIVM LNMEDGVIRS RETVVSFLDG EFPVARPYAL LTAPDGALFI
SDDLKGNVYR MYYKGSDAPQ EELENE
|
|---|
| |