| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3218 |
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| Symbol | |
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| ID | 4019747 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3851689 |
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| End bp | 3854001 |
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| Gene Length | 2313 bp |
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| Protein Length | 770 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637957271 |
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| Product | DNA topoisomerase IV subunit A |
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| Protein accession | YP_564217 |
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| Protein GI | 91794566 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
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| TIGRFAM ID | [TIGR01062] DNA topoisomerase IV, A subunit, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000131393 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGATG CGATAAATTT AAGCCTGGAT GGCGTGGAAC AAATGCCACT GCGCCGTTTT
ACCGAAGAAG CCTACCTGAA TTACTCCATG TACGTCATCA TGGACAGGGC CTTGCCCCAT
ATAGGTGATG GCCTAAAGCC AGTACAGCGC CGTATTATAT ATGCCATGAG TGAGTTGGGA
TTATCGGCTC AGTCTAAGCA TAAAAAGTCC GCCAGAACCG TCGGTGACGT ACTGGGTAAG
TATCATCCTC ACGGTGATAG TGCTTGTTAT GAAGCCATGG TGTTGATGGC GCAGCCATTT
TCATATCGCT ATCCTTTGGT GGACGGCCAA GGTAACTGGG GGGCACCGGA CGATCCTAAA
TCCTTCGCCG CCATGCGTTA TACCGAAGCC AGATTATCTA AATTTTCAGA GGTGTTATTA
AGCGAGCTAG GCCAAGGCAC GGTGGATTGG GGGGATAACT TCGATGGCAC CATGAAAGAG
CCTAAGACCT TACCGGCGCG TTTACCGCAT ATCTTACTCA ACGGCATTAC CGGCATCGCC
GTGGGCATGG CAACTGACGT GCCGCCACAC AATGTGCGTG AATTGGTGGC CGCCTGTGTT
GAATTGCTCG ATGAGCCTAA GACAGAGCTT GCTCGCCTAT TAGAAATCGT CCCTGGGCCT
GACTACCCCA CAGAGGCGGA AATCATTACC CCTAGTGCTG ATATTGCTAA GATTTATGAG
ACAGGTCGCG GTTCAATTAA AGCCCGCGCC GTCTATACCC TAGAGCAAGG CGAAATCATC
ATCACCGCAC TGCCACATCA GGCGGGTAGC GGTAAAATTC TCGAGCAAAT CGCCAATCAG
ATGATCGCCA AGAAGCTGCC TATGGTAGCG GATTTACGTG ATGAATCAGA TCATGAAAAC
CCAGTGCGCT TAGTGATAGT GCCGCGCTCG AATCGGGTCG ATTGCGATCA ACTGATGGCA
CACCTTTTTG CTACCACAGA TTTACAGAAA AGCTTTAGAG TCAACCTTAA CGTGCTAGGC
CTAGATGGCC GCCCGCAGGT TAAAGGCCTT AAAGAAATGC TCAGCGAATG GTTGGTTTAC
CGTGTGGGTA CTGTCACCCG CAGGCTTGAA TACCGCTTAG AGAAAGTACT GGCTCGACTG
CACATTCTTG ATGCCTTATT GATTGCCTTC TTGAACATAG ACGAAGTAAT AGAAATCATT
CGTTATCAAG AAGATCCTAA GAGTGAATTA AAAGCGCGCT TTAATTTAAC CGACAAGCAA
GCCGAAGCCA TTTTAGATTT AAAATTGCGT CACTTAGCCA AGCTTGAAGA ATTTAAAATC
ACCGCCGAGC AAGAAGAATT GGCTGCAGAG CGTGACAAAT TGCAGCTTAT TCTTGGTTCA
GAGCGCCGCT TAAAAACCTT AGTGAAGAAA GAACTGATTG CCGACGGCGA AACCTATGGC
GATGCCAGAC GCTCACCCAT AGTCGAGCGC AGTGAATCCA AAGCATTAAC CCAGCAAGAG
CTTACGCCAA CAGAAGCGGT CACCGTGGTG TTATCGGAAA AAGGCTGGGT GCGCTGTGCC
AAGGGCCATG ATGTTGACGG CCAAGCGCTT TCCTATAAGA GTGGTGACAG TTATCTCGGA
AGTGCCATAG GTAAGAGTAA TCAAGCGGCG GTGTTTATCG ATACTAGCGG CCGCGCCTTT
GCCACCGACA GTCATACCTT ACCCTCGGCC CGCAGCCAAG GTGAACCCAT CACCACCCGC
TTTAATATGG CCCCAGGTGA GAGCATGCAA CACGTTCTCA TGGGCGATGA TGATCAGCGC
TACTTAATGG CATCAGATGC AGGCTACGGC TTTATTTGTA GCTTCTCCGA TATGGCCAGT
CGCAATAAAG CCGGTAAGGC GCTACTGACG TTGCCAGAAA ATGCCCAGTC CCTGATGCCC
AAGCGTATCG ATAGCAGTCA ATCACCGAGT ATCTTAGCCA TCACCAACGA AGGGCGGATG
TTGATGTTTG AGCTCGATGC ATTGCCGCAG CTGTCTAAAG GCAAGGGTAA TAAAATCATC
GGCATTCCAT CGGAGCGCTC GAAAGCCCGC GAAGAGTTAT TAGCACACTT GTGTTTAGTC
CCGGCAGATT GCAGTGTGAC CTTGTGGGCG GGTAAGCGCA AGCTCACCTT GAAACCCAGT
GATTTAGAGC ATTATCGCGG CGAACGTGGC CGAAGAGGCG CTAAACTGCC AAGAGGATTA
CAGCGGGTCG ATAGCGTCGA TATTGAAGCA TCATCGCTAT CAGCCGAACT CGAAGACGGC
GAGCCAAACA TCAGCGATGA CAGCCCAAGC TAA
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| Protein sequence | MSDAINLSLD GVEQMPLRRF TEEAYLNYSM YVIMDRALPH IGDGLKPVQR RIIYAMSELG
LSAQSKHKKS ARTVGDVLGK YHPHGDSACY EAMVLMAQPF SYRYPLVDGQ GNWGAPDDPK
SFAAMRYTEA RLSKFSEVLL SELGQGTVDW GDNFDGTMKE PKTLPARLPH ILLNGITGIA
VGMATDVPPH NVRELVAACV ELLDEPKTEL ARLLEIVPGP DYPTEAEIIT PSADIAKIYE
TGRGSIKARA VYTLEQGEII ITALPHQAGS GKILEQIANQ MIAKKLPMVA DLRDESDHEN
PVRLVIVPRS NRVDCDQLMA HLFATTDLQK SFRVNLNVLG LDGRPQVKGL KEMLSEWLVY
RVGTVTRRLE YRLEKVLARL HILDALLIAF LNIDEVIEII RYQEDPKSEL KARFNLTDKQ
AEAILDLKLR HLAKLEEFKI TAEQEELAAE RDKLQLILGS ERRLKTLVKK ELIADGETYG
DARRSPIVER SESKALTQQE LTPTEAVTVV LSEKGWVRCA KGHDVDGQAL SYKSGDSYLG
SAIGKSNQAA VFIDTSGRAF ATDSHTLPSA RSQGEPITTR FNMAPGESMQ HVLMGDDDQR
YLMASDAGYG FICSFSDMAS RNKAGKALLT LPENAQSLMP KRIDSSQSPS ILAITNEGRM
LMFELDALPQ LSKGKGNKII GIPSERSKAR EELLAHLCLV PADCSVTLWA GKRKLTLKPS
DLEHYRGERG RRGAKLPRGL QRVDSVDIEA SSLSAELEDG EPNISDDSPS
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