Gene Sden_3208 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_3208 
Symbol 
ID4019734 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp3842470 
End bp3843837 
Gene Length1368 bp 
Protein Length455 aa 
Translation table11 
GC content48% 
IMG OID637957258 
ProductN-acetylmuramoyl-L-alanine amidase 
Protein accessionYP_564207 
Protein GI91794556 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000058641 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCATA GCATTATCTT CACCCAAGTC TTATTCAGCA TATTATTGAG CGTGGCCAGT 
GTAGCGGCTT GGGCCAGTAA TAAGCTCGAC AGCGTGCGTA TATGGGCAGC CCCTGAGTCT
ACTCGAGTTG TTTTTGACTT GACTCAAGCC CCTAGGTACG CAGACTTTAC CCTGAGTAGC
CCCCATAGGT TAGTGGTGGA TTTAGAGGAT ACTCACCTTG GGGTTAATTT AGCGAAAGTT
GCCAATAACA GTAAGTTAAT CAAGAGTATT CGTTATAGCA CCCCCCCAAA AAAAGGCACC
TTGCGTTTAG TGCTTGATTT ACACAAACCT GTAAAAGCTA ATTTGTTTTC ACTGCCACCC
ACGGCGCCCT ATGGCAATCG TTTGGTGGTG GACTTAGATG ACTCAGCATC CGCGCAGTCT
GCAAGCTCGA GTTCAAGCAG TTCAACCCCA AGTAATTTTG CTGCATCTAG CCAAGGCTTA
AGAGATTTAG TTATTGCCAT TGATGCGGGG CACGGCGGTG AAGACCCCGG CTCCATTGGG
CCTTCTGGTA CCCATGAAAA ACGCGTGGTA CTGGAAATTG CCAACCGTTT AGCGGCCAAA
ATTAATCAAA CACCAGGCAT GCGCGCCGTT ATGACGCGTC GAGGCGATTA TTTTGTTAAC
TTGAATAAGC GCTCCGAGCT TGCCCGTAAT AGTAAAGCCG ACTTGCTTAT TTCAATTCAT
GCCGATGCAT TTACCTCCCC TAAGCCCCAA GGTGCTTCGG TGTGGATATT GTCAATGCGC
CGCGCCAACA GTGAAATTGG TCGTTGGCTC GAGCAAAAAG AAAAACACTC AGAGCTGCTG
GGCGGCGCCG GTGAAATTAT TCAAAATACC GATAGCGAAC AGTATTTGGC GATGACCTTG
CTGGACATGT CGATGAATAG CTCCATGGCC ATTAGTCATG CAATCGCTGG CGATATCATA
AAAGACTTAA ACTCAGTGAC TAAGCTGCAT AAGCATAAAC CTGAGGCGGC AAGTTTTGCC
GTGCTTAAAT CTCCGGATAT TCCGTCTATT TTGGTAGAAA CAGGCTTTAT CTCTAATCCC
TATGAAGAGC GACAGCTTAA AAGTGGGGTA TATCAGGATA AACTAGCCAG AGCGATACAT
TCAGGCGTGC TGAGGTATTT TTCCACTAAT GCCCCAAGTG ATACCGTTCT TGCCAAAAGG
GGCGTAAGTA CCAGTACGAG TAGCCAAAAA CACAAGGTTG CCCGTGGGGA GTCGCTCTCT
GTGATTGCTC AGCGCTATCA AGTGTCTGTC ACCCGACTTA AGCAGGCGAA TAATCTTAGG
TCCGATGTGG TGCACGTTGG CCAAGATCTT GTGATCCCAA GGGCTTAG
 
Protein sequence
MNHSIIFTQV LFSILLSVAS VAAWASNKLD SVRIWAAPES TRVVFDLTQA PRYADFTLSS 
PHRLVVDLED THLGVNLAKV ANNSKLIKSI RYSTPPKKGT LRLVLDLHKP VKANLFSLPP
TAPYGNRLVV DLDDSASAQS ASSSSSSSTP SNFAASSQGL RDLVIAIDAG HGGEDPGSIG
PSGTHEKRVV LEIANRLAAK INQTPGMRAV MTRRGDYFVN LNKRSELARN SKADLLISIH
ADAFTSPKPQ GASVWILSMR RANSEIGRWL EQKEKHSELL GGAGEIIQNT DSEQYLAMTL
LDMSMNSSMA ISHAIAGDII KDLNSVTKLH KHKPEAASFA VLKSPDIPSI LVETGFISNP
YEERQLKSGV YQDKLARAIH SGVLRYFSTN APSDTVLAKR GVSTSTSSQK HKVARGESLS
VIAQRYQVSV TRLKQANNLR SDVVHVGQDL VIPRA