| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3174 |
|---|
| Symbol | panB |
|---|
| ID | 4019700 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 3807204 |
|---|
| End bp | 3807998 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637957224 |
|---|
| Product | 3-methyl-2-oxobutanoate hydroxymethyltransferase |
|---|
| Protein accession | YP_564173 |
|---|
| Protein GI | 91794522 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0413] Ketopantoate hydroxymethyltransferase |
|---|
| TIGRFAM ID | [TIGR00222] 3-methyl-2-oxobutanoate hydroxymethyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.180667 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAAG TCACTAGCTC TACCCTGTTG AAATTTAAGC AAGAAGGCAC TAAATTCACC
TCGATAACGG CATATGACGC AAGCTTTGCT GCCGCCTTTG ACAGCGAAGG GATAGACGCC
ATTTTGGTGG GAGACTCTTT AGGCATGGTA CTCCAAGGCC ATGATGACAC CTTACCTGTG
ACCACAGCTG ACGTGGCATA TCACACAGCT TGCGTGCGCC GGGGGATCAG CCGTGCACTG
CTCATCGCCG ACATGCCTTT TATGAGCTAT GCTACCCCAG AGCAAGCCAT GACCAATGCC
ACCACCTTAA TGCAAGCGGG TGCCAATATG GTCAAACTTG AAGGGGGTCA TTGGCTACTC
GAAACTGTCA CCATGCTGAC CCAAAGAGGG ATCCCTGTCT GTGGTCACTT AGGCTTAACG
CCACAATCTG TGCATGTATT TGGCGGCTTT AAGATGCAAG GTAAAGACGA GAAAAATGCC
CAGCGCATCT TAGATGAAGC CTTAGCCTTG CAAGATGCGG GGGCTCAGTT GTTAGTACTT
GAATGCATCC CAGCAGCCTT AGCCAAAACC ATTACTCAAG CCGTGGCTAT TCCAGTAATA
GGCATAGGTG CAGGGGCCGA TACCGACGGT CAAATCTTGG TGATGCATGA TGTGCTAGGG
ATCACCAGCG GCTATATTCC CAAATTTTCG AAAAACTATC TAAAGCAAAC TGGTGAAATC
CGTTCAGCCA TCAAGGCTTA TATTGATGAA GTCGCCGCCG GCGATTTCCC CAGTGAAGAA
CACACCTTAG TGTAA
|
|---|
| Protein sequence | MSKVTSSTLL KFKQEGTKFT SITAYDASFA AAFDSEGIDA ILVGDSLGMV LQGHDDTLPV
TTADVAYHTA CVRRGISRAL LIADMPFMSY ATPEQAMTNA TTLMQAGANM VKLEGGHWLL
ETVTMLTQRG IPVCGHLGLT PQSVHVFGGF KMQGKDEKNA QRILDEALAL QDAGAQLLVL
ECIPAALAKT ITQAVAIPVI GIGAGADTDG QILVMHDVLG ITSGYIPKFS KNYLKQTGEI
RSAIKAYIDE VAAGDFPSEE HTLV
|
|---|
| |