| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3166 |
|---|
| Symbol | |
|---|
| ID | 4019692 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3798080 |
|---|
| End bp | 3800347 |
|---|
| Gene Length | 2268 bp |
|---|
| Protein Length | 755 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637957216 |
|---|
| Product | GGDEF domain-containing protein |
|---|
| Protein accession | YP_564165 |
|---|
| Protein GI | 91794514 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGATT GGGCGCTAGC AAGATTAAAT ACACAGCAAA TCGATTTGTC TTCTCAGAGT
CAGGCCGAGG CCTATGGACA ATTAACGCGC AACGAGCTTG CCAGTATTTG CTCTCAGCTT
AACTGTGATG CGGCCTTTAT TGTGTTTCAC CATCCTAACG ATTATCAAGC GTTTGGCGGC
ATACTCCCCC ATGATGTGCG CTGGATTGAT GAGAAGCCGC CACAGCCAAC AATTAACACT
CGCCAAGTAA AGCCCAAGCA AGGAATAGAG GCTAATAGTG CCGTCAATCA GGTGATCAAT
AGTGCCATTG ATGGTCTGAT TAGCGATGAT AACTATCTTG AATCCGTATT TGCGGCTAAA
GATGCAAAAT TTGCCACTGA AATGTTGCCG CAACGGGCAC TTAATGCCCT AAAAGTGCTT
ACTGAGCACA GCCTGATGAT GAGTCGCCCC TGTAACGTGG GTGATACCTG GCTAGTACTT
GGGGTCATCA CCCATAAACC TTTGGCCTTA GTATTAGATA AACATGCCTA CCACTTAGCT
TCATCCCTTG AGCTGCAAGC ATTAAGTTTC TCCATCGCCA AGAAAGACCG CCAATACCAA
GAATTATTTC AGCAGTTGCC TATTCCTTGC GCCTTGATAG ATAGCGATAA CAGGGTGATG
GGCCTGAACC ATATCGCTAA AAATAGTCTG TCTCTTGAAC TGACAGCCAG TGTATTTACT
CTCTTGGATG TGGATGATCA TGCCATGCTG CACGACACCC TGCACATAGT CAGGGAAGGT
TTGCTAAGGC AGGCATGGTG TGAGGTACCG TTATTGTTAT CGGGTCAGCG TCACTGGTTT
AAACTGAGTT TTTGTCATGC ACTCGATGAT AAGGCCCAAC TCCTTATGTT GGCTGAAGAT
ATCACCGAGC GCTATCGCTT AGCCGATGAG TTGTCGTTTC ACTCTAATCA CGATGTATTG
ACGGGTTTAC CTAACCGAGT GCAGTTTGAG TTATTGCTGG ATGAGGCTCT GAAAGATCCT
GATAGCGCCA ATGCCTGTGT GGCTTTTCTG GATTTAGATC AATTTCAAGT GATTAACGAT
GTCAGCGGTC ATCAAGCCGG TGATGAGTTG TTATGCCAAG TGGCAAAACG CTTGAAGCTC
TTGCTGCGTA AAGGTGATGT GGTTGCTCGC CTTGGTGGTG ATGAATTTGG CATATTAATG
TATTCGGCAA CCCAAGAGTC GGCCACCTTA GTGGCAAAAC GCATTTGCCT GCAGCTGTCA
GAACATGAGT TTCAATGGCG CAAGGTTAAG CACAATGTCA GCGTTAGCAT GGGGCTGGCA
AAGCTTGATA AAAATGCGGG CGATATTTAT ACCGTCTTGA GTCAAATCGA TGCATCTTGC
CGCTTAGCCA AGGAAGAAGG CCGTAATCAG TGGCATTTTT ACAGTAAAGA TGATCCGCAG
ATAAGTAAGC TTTACAATCA GATGCTGGCT TCGGTGGATA TCACAGGCGC CTTAGCGCTG
GATGAGTTTG AGCTGTTTTA TCAACTGATT GAACCCTTAG AAAAAGCTGA CACTGGCCTT
CATATGGAAG TCTTGCTGCG CATGGTGCAA AAAGATGGCA GCTATGTGTC GCCAGCCATT
TTTCTGCCAG CGGCTGAACG TTACAATTTG GCCTCCCGTA TCGACCGCTG GGTGATTGAT
AACTTGCTTA AGTGGGGGGC AAATAACTTA GCGACTTGGC AACAGCTGAC CATGGTATCC
ATTAACCTGT CTGCCCTGTC ATTAGGGGAT CAAAAGTTTA TGAGCTGGCT TGAAATGCGC
CTCATGGTGG AGCCTGAACT GGTGGATAAA CTCTGTTTTG AGATAACCGA AACCGCCGCA
GTGAGTCAGT TAGATCAAGC CACTGCCTTG ATTGATTTAT TGCAGCCTCT AGGTTGTAAA
TTGGCGTTAG ATGACTTTGG TTCTGGTTTT TCAAGTTTTG CTTATCTTAA GTGTTTAGAC
GTAGACTTTG TCAAAATTGA TGGTCAATTT GTGGTGAACC TGTGTCAGGA TAAGAGTGAT
AAAGCCATAG TCGCGGCCAT CTGCCAGCTA GGTAAGGATA TGGAGTTTGA AGTCATTGCC
GAGTTCGTTG AAAGCGTCGA AGTGGGTTAT CTGTTGAAAA ACTTAGGCGT CGACTATGCC
CAAGGCTACG CCATCGCTAA ACCACAAAGA TTATCTAGCC TAACATCTGG CTTACGTACC
CCTTGGTTGG TGTCTGAAGC CTCTTTCTAT TCTGGCGCCG ATATTTAA
|
|---|
| Protein sequence | MEDWALARLN TQQIDLSSQS QAEAYGQLTR NELASICSQL NCDAAFIVFH HPNDYQAFGG
ILPHDVRWID EKPPQPTINT RQVKPKQGIE ANSAVNQVIN SAIDGLISDD NYLESVFAAK
DAKFATEMLP QRALNALKVL TEHSLMMSRP CNVGDTWLVL GVITHKPLAL VLDKHAYHLA
SSLELQALSF SIAKKDRQYQ ELFQQLPIPC ALIDSDNRVM GLNHIAKNSL SLELTASVFT
LLDVDDHAML HDTLHIVREG LLRQAWCEVP LLLSGQRHWF KLSFCHALDD KAQLLMLAED
ITERYRLADE LSFHSNHDVL TGLPNRVQFE LLLDEALKDP DSANACVAFL DLDQFQVIND
VSGHQAGDEL LCQVAKRLKL LLRKGDVVAR LGGDEFGILM YSATQESATL VAKRICLQLS
EHEFQWRKVK HNVSVSMGLA KLDKNAGDIY TVLSQIDASC RLAKEEGRNQ WHFYSKDDPQ
ISKLYNQMLA SVDITGALAL DEFELFYQLI EPLEKADTGL HMEVLLRMVQ KDGSYVSPAI
FLPAAERYNL ASRIDRWVID NLLKWGANNL ATWQQLTMVS INLSALSLGD QKFMSWLEMR
LMVEPELVDK LCFEITETAA VSQLDQATAL IDLLQPLGCK LALDDFGSGF SSFAYLKCLD
VDFVKIDGQF VVNLCQDKSD KAIVAAICQL GKDMEFEVIA EFVESVEVGY LLKNLGVDYA
QGYAIAKPQR LSSLTSGLRT PWLVSEASFY SGADI
|
|---|
| |