Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_3152 |
Symbol | |
ID | 4019678 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 3779643 |
End bp | 3780965 |
Gene Length | 1323 bp |
Protein Length | 440 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637957202 |
Product | sigma-54 factor, interaction region |
Protein accession | YP_564151 |
Protein GI | 91794500 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACGATA TAAAACTGAA AGCGGCCATA AATAATCAGC AGCTAACATC ATGGATAGGG GAGAGTGCAT TTATACTGAT AACGAAACAG AGATTAGGTG CCATGGCGAA AAGCGAGCTT CCTGTACTCA TCATAGGAGA GAGAGGTACG GGGAAGGAAA TTGCTGCACG CATGTTACAT GATTGCAGTG TTAGAACTGG GGCACCCTTT ATCAGCATCA GCTGTAAAAA TAGCAACAAG CAACAGCTAA TAGCTCAGAT AGAAAAGGGC ATATCCGCAG CCCAAGGAGG TAGCCTATAC ATTAAAAATG TTGATGACTT GGTTGAAGAG GCTACTGGAT CCTTAAAAAG CTTTTGGCTT CGCAATGATG TTTCAAAGCC AGATGTTCGC CTCATCGTCA GCAGTTCGAC TGCGCCTATG ATCGAGGTTG AACTTATAGA AAATGAAGCT GGATTAATAA AAGAACATTT CCTACATTGG TTGCATTACC ACTGCCTGAA TATTGAACTA CCTACACTCT CTAATCGGGA ACAAGACATT GAAGCGCTCG TACAAGCGTA TCAATTGAGT GATCACAATA TAGGAAAACT CTCATTTCAA GCTTGTGCTT GGGATACATT GAAGCATTAT TCTTGGCCTG AAAACGTTAA GCAATTGAAA AGGTGTCTTG ATAAATTAGC GGTGCAGGCT GAATCATCGA TTATCAATCG ACAAATATTA CTCAATAGTT TTCCATTAAT GAGGCAAACA CAAGCGTTAA GCGAGCTGTG TATAGACCCA ATAAAACGGC AGATATTTAC TAAACCTTAC TTGAAAATTG ATAATCAAGC TGTCGGATTT TCTGCCCCTG TGTTGACTGT TAACCATCAA CAAGATCAGG TGGGGTCAAC TGAAAGCGAT AATATAGTCC ACCATGCTAA GAATCATCCT GGGTTGAATA AAGCCATTAC TTATTTGTAT AAAAACTTCA AAGCTCATCT CACCATGGAG GAGTTGGCAA AGCATGCATG CATTAGCCCT TCTCATTTAT CTTATCTGTT TAAGCATTAT TTAGGGATGT CATTTAAACA GGTCTTACTA CGGCTAAGAA TTGTAAAAGC GATGGAAATA TTCTCCCAAA CCCCCCATAG GCAGGTAACA CAAGTCTGTG ATGATGTCGG TTTTTCGGAT TTGAGTTTTT TTGTGCGTAA ATTCAAAACC ACGGTTGGCG TTAGCCCTGG TGTTTACCGA GATCAATTTA GTCAATCAGA ATCTAGCCCA GAACTGTTGG CGTTGGTTAA TGACTTAGCA CATCCATTAC TGCAGTTATA TATTCAACAT TAG
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Protein sequence | MNDIKLKAAI NNQQLTSWIG ESAFILITKQ RLGAMAKSEL PVLIIGERGT GKEIAARMLH DCSVRTGAPF ISISCKNSNK QQLIAQIEKG ISAAQGGSLY IKNVDDLVEE ATGSLKSFWL RNDVSKPDVR LIVSSSTAPM IEVELIENEA GLIKEHFLHW LHYHCLNIEL PTLSNREQDI EALVQAYQLS DHNIGKLSFQ ACAWDTLKHY SWPENVKQLK RCLDKLAVQA ESSIINRQIL LNSFPLMRQT QALSELCIDP IKRQIFTKPY LKIDNQAVGF SAPVLTVNHQ QDQVGSTESD NIVHHAKNHP GLNKAITYLY KNFKAHLTME ELAKHACISP SHLSYLFKHY LGMSFKQVLL RLRIVKAMEI FSQTPHRQVT QVCDDVGFSD LSFFVRKFKT TVGVSPGVYR DQFSQSESSP ELLALVNDLA HPLLQLYIQH
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