Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_3129 |
Symbol | |
ID | 4019655 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 3759583 |
End bp | 3761289 |
Gene Length | 1707 bp |
Protein Length | 568 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637957180 |
Product | amidohydrolase 3 |
Protein accession | YP_564129 |
Protein GI | 91794478 |
COG category | [R] General function prediction only |
COG ID | [COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAT ATCCCTTCAA CGCCACCCAA TTGGCCGCCA CAGCATTGTT CACCAGCTTA GGCTTAGGCT CATTAACGGC CTGCGCCACA GAAGAAGTAG CCGACACCTT ACTCACTAAT GGACAGATTT ATGGTTACCC ACAGGCCAGT AGCTTGGCCA TTAGTGACGG TAAAATTGTC CATATTGGCA GTAATAGCAC CACTATGGAT TATGTCGGTA CTCAGACCCG AGTTATTGAC CTTGAAGGCG CTTATGTGAT GCCAGGTTTT ATCGACAATC ATAACCATGT GTTCGAGGCG GCTGGCGACA TAGGCAGCGA TTGCTTACTG GATAAAGTCA ATTCACTTGC TGGATATATC ACTGAGCTAA AAGCCTGTGG CAATCAAGAC ACTGACAGCG AGTGGCTATT AGGTTACGGC CATGAATTAG ACGTTTTATT AGATTATCAA TCACTTGGTA ATGGTGAACA AACACCGCTT GAAATATTAG ATAGTCTCTA TCCGGACAGG CCCGTAGCCA TCATGGAGCA AACCTCTCAT TCCATGTGGG TTAACTCCAT CGCCTTGGCA AGAGCCGGAA TAACGGCTAA AAGCACTGCG CCTCAAGGGG GCAAGTACCT TAAAGAGCCA CACACTGGCA AGCTTTTAGG GGTATTACTC GATACCGCAG GCGATGAACT CATGGAGCTT GCCTGGAACG CCCAGCCCAA TAGAGCCAAG GCCAACTATC AGAGCCTAAT TAATGGCTTA GATGAAGCGG CCAAACACGG CATCACAGCC ATAGGTGATG GCCGCCTCTA TTGGCAGCGC GGCTGGTATG AAACTTGGCA GCAAGTGGCA AAAGATAATG CCCTCACCGC CAGAGTCAGC CTGCGTCCTT GGGTGTATCC AGGCCAAGAT GCGCAAAAGC AGTTAGCCTT TTTCAAACGT ATTCAAACTG ATGATACCAA TGAGTTATTA CTGGTCAATC AAGTGAAAAT CTATACTGAC GGCATCATCA ATAACGGCAC CGCCAGAGTA TTAAGCCCCT ATGTTTACAG CCCATTGACT GATAGCCCTT TGGGAGTGGA TTACATTCCT GCTGGCGAGC TAAGCACGTG GCTGGTGAAA CTGAATAATC TAGGCTTTGG CGCTCATATT CACGCCATAG GTGATGCTGG GGTGCGTAAT GGTTTGGATG CCATTGAAGT GATGCGAAAG CAAGGCGTCA CTCGCCCCTA CGGCATGACT CATCTTGAGA TGGTGGCAGA CACTGATATC CCGCGTTTTG CAGCGCTTAA GGTCGATGCC GATTTTCAGG TAGGCAATCA TGACATAGCC ACAGGAGATC ACGATTGGGC CATCCCTTAC CTAGGCAAGC AGCGCGCCAA AGCCTTGTTA CCCGTACAGG CCATTTGGCA AACTGGCGCT AACACCACCC TAAGCAGTGA TTGGAATGTA AATGATATCA ATCCATTAGT TGGGATATCC AGCGCCATCA AGATGCCAGG GCCGCTTGAT ATCAATAGTG CCATCGACGC TTATACCATC AATGCCGCCA AAGCCTTAGG GTTAGAAAAA GTCACCGGCT CTATTACTTT AGGTAAGTTT GCCGACCTTG CGATTCTCGA GGGCGACATC ACCAAAATGA CTCCAGCGGA AATCGCAAAC ACTCAACTGT TAATGACATT ACTGGAAGGA GAAGTGGTAT TTGAGGCGCA GGAGTAA
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Protein sequence | MKKYPFNATQ LAATALFTSL GLGSLTACAT EEVADTLLTN GQIYGYPQAS SLAISDGKIV HIGSNSTTMD YVGTQTRVID LEGAYVMPGF IDNHNHVFEA AGDIGSDCLL DKVNSLAGYI TELKACGNQD TDSEWLLGYG HELDVLLDYQ SLGNGEQTPL EILDSLYPDR PVAIMEQTSH SMWVNSIALA RAGITAKSTA PQGGKYLKEP HTGKLLGVLL DTAGDELMEL AWNAQPNRAK ANYQSLINGL DEAAKHGITA IGDGRLYWQR GWYETWQQVA KDNALTARVS LRPWVYPGQD AQKQLAFFKR IQTDDTNELL LVNQVKIYTD GIINNGTARV LSPYVYSPLT DSPLGVDYIP AGELSTWLVK LNNLGFGAHI HAIGDAGVRN GLDAIEVMRK QGVTRPYGMT HLEMVADTDI PRFAALKVDA DFQVGNHDIA TGDHDWAIPY LGKQRAKALL PVQAIWQTGA NTTLSSDWNV NDINPLVGIS SAIKMPGPLD INSAIDAYTI NAAKALGLEK VTGSITLGKF ADLAILEGDI TKMTPAEIAN TQLLMTLLEG EVVFEAQE
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