| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3127 |
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| Symbol | lysS |
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| ID | 4019653 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3756582 |
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| End bp | 3758084 |
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| Gene Length | 1503 bp |
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| Protein Length | 500 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637957178 |
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| Product | lysyl-tRNA synthetase |
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| Protein accession | YP_564127 |
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| Protein GI | 91794476 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
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| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.578616 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGAAC TAGTACAAGA CGAGAACAAA CTGATTGCCG AGCGCCGTGC CAAGTTAGAT
CACATACGCA CACAATGCCC AGCTAACGCC CACCCTAATA CGTGGGAGCG TAGCCATAAA
GCGGCTGAGC TACAGGCGCA GTACGGTGAA AACACTAAGG AAGAATTAGA AGCTTTAGGT
TATCAAACCA GCATAGCTGG CCGTGTGATG GCAAAACGTG GTCCTTTCTT GGTGATTCAA
GATGTGTCTG GCCGTATTCA AGCTTATGCG GGCAAACCAG TGCAGGGCGA TCTGAAAGAG
CGTTATCAAG GTCTTGATAT CGGTGACATT ATTGGTGTTA AAGGTCAGCT GCATTTGTCT
GGTAAAGGCG ATTTGTATGT CAATATGGAA GAATACCAGC TGTTGACTAA AGCGCTGCGC
CCATTGCCTG AAAAATTCCA CGGTTTAACG GATCAAGAAA CCCGTTACCG CCAGCGTTAT
GTTGACTTGA TCGTTAACGA AGAGTCACGC AACGCCTTTA TTATGCGCTC TAAAGTGGTT
TCAGCTATTC GTAACTTCAT GATCAAAAAA GAGTTCATGG AAGTTGAAAC CCCAATGATG
CACGTTATTC CAGGCGGTGC TTCTGCGCGT CCTTTCGTGA CACACCACAA TGCATTAGAC
ATGGCCATGT ACTTGCGTAT CGCGCCAGAG CTTTATCTTA AGCGTTTAGT TGTGGGCGGT
TTTGAGCGGG TGTTTGAAAT CAACCGAAAC TTCCGTAACG AAGGCCTATC GCCACGCCAT
AACCCAGAAT TCACTATGAT GGAATTCTAT ATGGCTTACG CGGATTACCA AGATCTTATG
GATCTCACCG AAGAGATGCT AAGTTCAATC GCCATCGATT TATTAGGCAG TGCGCAAATG
CCTTACGGCG AGCACACGGT TGATTTTGGT GGCCCTTATG CTCGCTTGAG CATGTTAGAA
GCGATTCAAA AGTACAATCC AGAGAACGCG ACTATTCAAG CCATGACTTA CGAGCAAGTG
AAAGACGTCG AGTTCATGCG TGATTTAGCA TCGAGCCTAG GCATCAAGCT TGAAAAGTTC
TGGACCTGTG GTCAGTTATT GGAAGAAATT TTTGGTGAAA CTGCTGAACC TAAGCTGATG
CAGCCGACCT TCATTACTGG CTACCCAGCG GACATTTCAC CGCTTGCACG CCGTAACGAT
AACAATGATT TTATCACTGA CAGATTCGAG TTCTTCATCG GTGGCCGTGA AGTGGCTAAC
GGTTTCAGCG AGCTTAATGA TGCGCAAGAT CAAGACAATC GTTTCAAGGC GCAAGTTAAT
GCTAAAGATG CCGGTGATGA TGAAGCCATG TTCTATGATG CTGATTACAT CACAGCCCTT
GAGCACGGTT TACCGCCAAC GGCAGGTCAA GGTATTGGTA TCGATCGTTT AGTGATGTTA
TTTACTAACA CTCACACTAT CCGCGACGTG ATTTTATTCC CAGCGATGCG CCCACAGGCG
TAA
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| Protein sequence | MTELVQDENK LIAERRAKLD HIRTQCPANA HPNTWERSHK AAELQAQYGE NTKEELEALG
YQTSIAGRVM AKRGPFLVIQ DVSGRIQAYA GKPVQGDLKE RYQGLDIGDI IGVKGQLHLS
GKGDLYVNME EYQLLTKALR PLPEKFHGLT DQETRYRQRY VDLIVNEESR NAFIMRSKVV
SAIRNFMIKK EFMEVETPMM HVIPGGASAR PFVTHHNALD MAMYLRIAPE LYLKRLVVGG
FERVFEINRN FRNEGLSPRH NPEFTMMEFY MAYADYQDLM DLTEEMLSSI AIDLLGSAQM
PYGEHTVDFG GPYARLSMLE AIQKYNPENA TIQAMTYEQV KDVEFMRDLA SSLGIKLEKF
WTCGQLLEEI FGETAEPKLM QPTFITGYPA DISPLARRND NNDFITDRFE FFIGGREVAN
GFSELNDAQD QDNRFKAQVN AKDAGDDEAM FYDADYITAL EHGLPPTAGQ GIGIDRLVML
FTNTHTIRDV ILFPAMRPQA
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